miRNA display CGI


Results 1 - 20 of 207 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28935 3' -66.5 NC_006146.1 + 95092 0.66 0.518495
Target:  5'- uCCCGCaGGGC-CUCgaAGGC-GGCGCCc -3'
miRNA:   3'- -GGGCG-CCCGaGGGg-UCCGgCUGCGGu -5'
28935 3' -66.5 NC_006146.1 + 167684 0.66 0.518495
Target:  5'- aCCCGagGGGCgagcggggggcuUCCCCGGGgcCCGAgCGCg- -3'
miRNA:   3'- -GGGCg-CCCG------------AGGGGUCC--GGCU-GCGgu -5'
28935 3' -66.5 NC_006146.1 + 42423 0.66 0.518495
Target:  5'- gCCGUGGGC-CCCCuGGCCuACa--- -3'
miRNA:   3'- gGGCGCCCGaGGGGuCCGGcUGcggu -5'
28935 3' -66.5 NC_006146.1 + 169549 0.66 0.518495
Target:  5'- aCCCGagGGGCgagcggggggcuUCCCCGGGgcCCGAgCGCg- -3'
miRNA:   3'- -GGGCg-CCCG------------AGGGGUCC--GGCU-GCGgu -5'
28935 3' -66.5 NC_006146.1 + 168617 0.66 0.518495
Target:  5'- aCCCGagGGGCgagcggggggcuUCCCCGGGgcCCGAgCGCg- -3'
miRNA:   3'- -GGGCg-CCCG------------AGGGGUCC--GGCU-GCGgu -5'
28935 3' -66.5 NC_006146.1 + 154978 0.66 0.518495
Target:  5'- cCUCGCccaGGcGcCUCCUCGGGuCCGGcCGCCGg -3'
miRNA:   3'- -GGGCG---CC-C-GAGGGGUCC-GGCU-GCGGU- -5'
28935 3' -66.5 NC_006146.1 + 142667 0.66 0.518495
Target:  5'- cCUCGCccaGGcGcCUCCUCGGGuCCGGcCGCCGg -3'
miRNA:   3'- -GGGCG---CC-C-GAGGGGUCC-GGCU-GCGGU- -5'
28935 3' -66.5 NC_006146.1 + 151900 0.66 0.518495
Target:  5'- cCUCGCccaGGcGcCUCCUCGGGuCCGGcCGCCGg -3'
miRNA:   3'- -GGGCG---CC-C-GAGGGGUCC-GGCU-GCGGU- -5'
28935 3' -66.5 NC_006146.1 + 9165 0.66 0.518495
Target:  5'- aCgGCGGGCUCCCa---CCG-UGCCAc -3'
miRNA:   3'- gGgCGCCCGAGGGguccGGCuGCGGU- -5'
28935 3' -66.5 NC_006146.1 + 148822 0.66 0.518495
Target:  5'- cCUCGCccaGGcGcCUCCUCGGGuCCGGcCGCCGg -3'
miRNA:   3'- -GGGCG---CC-C-GAGGGGUCC-GGCU-GCGGU- -5'
28935 3' -66.5 NC_006146.1 + 145744 0.66 0.518495
Target:  5'- cCUCGCccaGGcGcCUCCUCGGGuCCGGcCGCCGg -3'
miRNA:   3'- -GGGCG---CC-C-GAGGGGUCC-GGCU-GCGGU- -5'
28935 3' -66.5 NC_006146.1 + 36749 0.66 0.518495
Target:  5'- cCCCucuuaGGGUUCCgCAGGCCG-CGUa- -3'
miRNA:   3'- -GGGcg---CCCGAGGgGUCCGGCuGCGgu -5'
28935 3' -66.5 NC_006146.1 + 128746 0.66 0.509518
Target:  5'- uCCCGCaggGGGUgUCCgAGGCCuucuucuggaguGugGCCAg -3'
miRNA:   3'- -GGGCG---CCCGaGGGgUCCGG------------CugCGGU- -5'
28935 3' -66.5 NC_006146.1 + 52425 0.66 0.509518
Target:  5'- aCCGUGGcCUCugCCCuccaguuugGGGUCGACGCCc -3'
miRNA:   3'- gGGCGCCcGAG--GGG---------UCCGGCUGCGGu -5'
28935 3' -66.5 NC_006146.1 + 170090 0.66 0.509518
Target:  5'- gCCgGCGGGag----GGGCCGGCGCCGc -3'
miRNA:   3'- -GGgCGCCCgaggggUCCGGCUGCGGU- -5'
28935 3' -66.5 NC_006146.1 + 88918 0.66 0.500608
Target:  5'- aCUG-GGGCUCUUguGGCUGAgGCUg -3'
miRNA:   3'- gGGCgCCCGAGGGguCCGGCUgCGGu -5'
28935 3' -66.5 NC_006146.1 + 59207 0.66 0.500608
Target:  5'- uCCUGCaGGGCUCCCCcaccuaCGACuCCAg -3'
miRNA:   3'- -GGGCG-CCCGAGGGGuccg--GCUGcGGU- -5'
28935 3' -66.5 NC_006146.1 + 3281 0.66 0.499721
Target:  5'- cCCCGCGGGaCcCCCCccuccgcccccgAGGCCcccagggGAgGCCc -3'
miRNA:   3'- -GGGCGCCC-GaGGGG------------UCCGG-------CUgCGGu -5'
28935 3' -66.5 NC_006146.1 + 2349 0.66 0.499721
Target:  5'- cCCCGCGGGaCcCCCCccuccgcccccgAGGCCcccagggGAgGCCc -3'
miRNA:   3'- -GGGCGCCC-GaGGGG------------UCCGG-------CUgCGGu -5'
28935 3' -66.5 NC_006146.1 + 1417 0.66 0.499721
Target:  5'- cCCCGCGGGaCcCCCCccuccgcccccgAGGCCcccagggGAgGCCc -3'
miRNA:   3'- -GGGCGCCC-GaGGGG------------UCCGG-------CUgCGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.