miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28935 5' -61.7 NC_006146.1 + 28277 0.66 0.654242
Target:  5'- -gCCGGGucucgGGUCUGGGGGUcugUGGUGGu -3'
miRNA:   3'- aaGGCCUg----CCAGGUCCCCG---ACCACUu -5'
28935 5' -61.7 NC_006146.1 + 25199 0.66 0.654242
Target:  5'- -gCCGGGucucgGGUCUGGGGGUcugUGGUGGu -3'
miRNA:   3'- aaGGCCUg----CCAGGUCCCCG---ACCACUu -5'
28935 5' -61.7 NC_006146.1 + 22121 0.66 0.654242
Target:  5'- -gCCGGGucucgGGUCUGGGGGUcugUGGUGGu -3'
miRNA:   3'- aaGGCCUg----CCAGGUCCCCG---ACCACUu -5'
28935 5' -61.7 NC_006146.1 + 12888 0.66 0.654242
Target:  5'- -gCCGGGucucgGGUCUGGGGGUcugUGGUGGu -3'
miRNA:   3'- aaGGCCUg----CCAGGUCCCCG---ACCACUu -5'
28935 5' -61.7 NC_006146.1 + 19043 0.66 0.654242
Target:  5'- -gCCGGGucucgGGUCUGGGGGUcugUGGUGGu -3'
miRNA:   3'- aaGGCCUg----CCAGGUCCCCG---ACCACUu -5'
28935 5' -61.7 NC_006146.1 + 15966 0.66 0.6443
Target:  5'- -gCCGGucuCGGgUCUGGGGGUcugUGGUGGu -3'
miRNA:   3'- aaGGCCu--GCC-AGGUCCCCG---ACCACUu -5'
28935 5' -61.7 NC_006146.1 + 61830 0.66 0.624395
Target:  5'- -gCUGGugGGggCaguGGGGCUGGUGc- -3'
miRNA:   3'- aaGGCCugCCa-Ggu-CCCCGACCACuu -5'
28935 5' -61.7 NC_006146.1 + 145179 0.67 0.604513
Target:  5'- gUUgCGGACGGUUagcuugAGGGGCUGGc--- -3'
miRNA:   3'- -AAgGCCUGCCAGg-----UCCCCGACCacuu -5'
28935 5' -61.7 NC_006146.1 + 54693 0.67 0.57879
Target:  5'- --gCGGACGGagCAGacuguccuggugaauGGGCUGGUGGGa -3'
miRNA:   3'- aagGCCUGCCagGUC---------------CCCGACCACUU- -5'
28935 5' -61.7 NC_006146.1 + 55255 0.68 0.530093
Target:  5'- -cCCGGGCGGcCCGggcgaagcggcucguGGGGCUcgcGGUGGg -3'
miRNA:   3'- aaGGCCUGCCaGGU---------------CCCCGA---CCACUu -5'
28935 5' -61.7 NC_006146.1 + 168479 0.68 0.516715
Target:  5'- aUCCGGccucacguccACGGUCgGGGGGCcGG-GGAc -3'
miRNA:   3'- aAGGCC----------UGCCAGgUCCCCGaCCaCUU- -5'
28935 5' -61.7 NC_006146.1 + 45396 0.69 0.452112
Target:  5'- uUUCUGGAgGGggcUCCGGGGGUUGGa--- -3'
miRNA:   3'- -AAGGCCUgCC---AGGUCCCCGACCacuu -5'
28935 5' -61.7 NC_006146.1 + 60793 0.7 0.384043
Target:  5'- -gCCGGACcaGGUCCAGGGcCUGGUccGGAc -3'
miRNA:   3'- aaGGCCUG--CCAGGUCCCcGACCA--CUU- -5'
28935 5' -61.7 NC_006146.1 + 13252 0.71 0.368118
Target:  5'- aUCagccUGGUCCAGGGGCUGGUGc- -3'
miRNA:   3'- aAGgccuGCCAGGUCCCCGACCACuu -5'
28935 5' -61.7 NC_006146.1 + 41049 0.71 0.360328
Target:  5'- gUCCGcGGCGGcCCuGGGGGCcucggGGUGGAg -3'
miRNA:   3'- aAGGC-CUGCCaGG-UCCCCGa----CCACUU- -5'
28935 5' -61.7 NC_006146.1 + 57120 0.71 0.337653
Target:  5'- gUCCGauAUGGUCCcuaauuucgGGGGGCUGGUGGc -3'
miRNA:   3'- aAGGCc-UGCCAGG---------UCCCCGACCACUu -5'
28935 5' -61.7 NC_006146.1 + 102363 0.73 0.284944
Target:  5'- gUCCGGGCacucaaaggucuccgGGUCCucGGGGaGCUGGUGGu -3'
miRNA:   3'- aAGGCCUG---------------CCAGG--UCCC-CGACCACUu -5'
28935 5' -61.7 NC_006146.1 + 112489 0.73 0.266
Target:  5'- -cCCGGcgcgcucauagagauAgCGGUCCAGGGGCcGGUGGAg -3'
miRNA:   3'- aaGGCC---------------U-GCCAGGUCCCCGaCCACUU- -5'
28935 5' -61.7 NC_006146.1 + 138801 0.75 0.208162
Target:  5'- cUUCGGAUGGgCCcGGGGUUGGUGAGc -3'
miRNA:   3'- aAGGCCUGCCaGGuCCCCGACCACUU- -5'
28935 5' -61.7 NC_006146.1 + 4414 1.03 0.002048
Target:  5'- cUUCCGGACGGUCCAGGGGCUGGUGAAa -3'
miRNA:   3'- -AAGGCCUGCCAGGUCCCCGACCACUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.