miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28936 3' -61.5 NC_006146.1 + 3839 0.69 0.56736
Target:  5'- uGGaGCCGGCggguaaGGGGGGUcgcccugGACCAcUUUUGGg -3'
miRNA:   3'- -CC-CGGUCG------CCCCCCA-------CUGGU-AGAGCC- -5'
28936 3' -61.5 NC_006146.1 + 4515 1.11 0.000883
Target:  5'- cGGGCCAGCGGGGGGUGACCAUCUCGGu -3'
miRNA:   3'- -CCCGGUCGCCCCCCACUGGUAGAGCC- -5'
28936 3' -61.5 NC_006146.1 + 6113 0.66 0.740233
Target:  5'- aGGCaacgguggaGGCGGuGGGGauccaGACCAUCUCc- -3'
miRNA:   3'- cCCGg--------UCGCC-CCCCa----CUGGUAGAGcc -5'
28936 3' -61.5 NC_006146.1 + 12855 0.67 0.654971
Target:  5'- aGGcGCCuggGGCGaGGcuGGGUGGCUgggcaggccggGUCUCGGg -3'
miRNA:   3'- -CC-CGG---UCGC-CC--CCCACUGG-----------UAGAGCC- -5'
28936 3' -61.5 NC_006146.1 + 14107 0.66 0.730993
Target:  5'- aGGCCcguccAGgGGGGacuuuaGGUGACC--CUCGGg -3'
miRNA:   3'- cCCGG-----UCgCCCC------CCACUGGuaGAGCC- -5'
28936 3' -61.5 NC_006146.1 + 14563 0.68 0.625992
Target:  5'- uGGGCCGcuuuCGGGGcGUGAgccCCAUCcCGGa -3'
miRNA:   3'- -CCCGGUc---GCCCCcCACU---GGUAGaGCC- -5'
28936 3' -61.5 NC_006146.1 + 14678 0.67 0.693347
Target:  5'- aGGGCCca-GGGGGGUucgcguugccaGGCCAccuUCUCa- -3'
miRNA:   3'- -CCCGGucgCCCCCCA-----------CUGGU---AGAGcc -5'
28936 3' -61.5 NC_006146.1 + 14819 0.67 0.654971
Target:  5'- cGGGCCGGaGGaGGGc-ACgGUCUCGGg -3'
miRNA:   3'- -CCCGGUCgCCcCCCacUGgUAGAGCC- -5'
28936 3' -61.5 NC_006146.1 + 15119 0.66 0.753026
Target:  5'- aGGGCCAccgagcggcucuucuGCGGcGGGGUcuaCAgcucCUCGGg -3'
miRNA:   3'- -CCCGGU---------------CGCC-CCCCAcugGUa---GAGCC- -5'
28936 3' -61.5 NC_006146.1 + 15934 0.68 0.606682
Target:  5'- aGGcGCCugGGCGaGGcuGGGUGGCUgggcaggccgGUCUCGGg -3'
miRNA:   3'- -CC-CGG--UCGC-CC--CCCACUGG----------UAGAGCC- -5'
28936 3' -61.5 NC_006146.1 + 17185 0.66 0.730993
Target:  5'- aGGCCcguccAGgGGGGacuuuaGGUGACC--CUCGGg -3'
miRNA:   3'- cCCGG-----UCgCCCC------CCACUGGuaGAGCC- -5'
28936 3' -61.5 NC_006146.1 + 17756 0.67 0.693347
Target:  5'- aGGGCCca-GGGGGGUucgcguugccaGGCCAccuUCUCa- -3'
miRNA:   3'- -CCCGGucgCCCCCCA-----------CUGGU---AGAGcc -5'
28936 3' -61.5 NC_006146.1 + 19011 0.68 0.616331
Target:  5'- aGGcGCCugGGCGaGGcuGGGUGGCUgggcaggccggGUCUCGGg -3'
miRNA:   3'- -CC-CGG--UCGC-CC--CCCACUGG-----------UAGAGCC- -5'
28936 3' -61.5 NC_006146.1 + 20263 0.66 0.730993
Target:  5'- aGGCCcguccAGgGGGGacuuuaGGUGACC--CUCGGg -3'
miRNA:   3'- cCCGG-----UCgCCCC------CCACUGGuaGAGCC- -5'
28936 3' -61.5 NC_006146.1 + 20834 0.67 0.693347
Target:  5'- aGGGCCca-GGGGGGUucgcguugccaGGCCAccuUCUCa- -3'
miRNA:   3'- -CCCGGucgCCCCCCA-----------CUGGU---AGAGcc -5'
28936 3' -61.5 NC_006146.1 + 22089 0.68 0.616331
Target:  5'- aGGcGCCugGGCGaGGcuGGGUGGCUgggcaggccggGUCUCGGg -3'
miRNA:   3'- -CC-CGG--UCGC-CC--CCCACUGG-----------UAGAGCC- -5'
28936 3' -61.5 NC_006146.1 + 23341 0.66 0.730993
Target:  5'- aGGCCcguccAGgGGGGacuuuaGGUGACC--CUCGGg -3'
miRNA:   3'- cCCGG-----UCgCCCC------CCACUGGuaGAGCC- -5'
28936 3' -61.5 NC_006146.1 + 23492 0.66 0.758453
Target:  5'- cGGGCUGGUGggcucgcucuGGGaGGUGcccGCCGUgaaCUCGGg -3'
miRNA:   3'- -CCCGGUCGC----------CCC-CCAC---UGGUA---GAGCC- -5'
28936 3' -61.5 NC_006146.1 + 23912 0.67 0.693347
Target:  5'- aGGGCCca-GGGGGGUucgcguugccaGGCCAccuUCUCa- -3'
miRNA:   3'- -CCCGGucgCCCCCCA-----------CUGGU---AGAGcc -5'
28936 3' -61.5 NC_006146.1 + 25167 0.68 0.616331
Target:  5'- aGGcGCCugGGCGaGGcuGGGUGGCUgggcaggccggGUCUCGGg -3'
miRNA:   3'- -CC-CGG--UCGC-CC--CCCACUGG-----------UAGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.