miRNA display CGI


Results 21 - 40 of 140 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28936 3' -61.5 NC_006146.1 + 39817 0.66 0.718868
Target:  5'- uGGaCUAGCGGGGGGUaGGCUaccccuuccuccgcGUUggCGGg -3'
miRNA:   3'- cCC-GGUCGCCCCCCA-CUGG--------------UAGa-GCC- -5'
28936 3' -61.5 NC_006146.1 + 70670 0.66 0.702846
Target:  5'- -cGCCAGCGGGaGGUGAUgAUCa--- -3'
miRNA:   3'- ccCGGUCGCCCcCCACUGgUAGagcc -5'
28936 3' -61.5 NC_006146.1 + 139363 0.66 0.702846
Target:  5'- cGGcGCCGG-GGGGGGUGccuGCUGUUUaguaGGa -3'
miRNA:   3'- -CC-CGGUCgCCCCCCAC---UGGUAGAg---CC- -5'
28936 3' -61.5 NC_006146.1 + 17756 0.67 0.693347
Target:  5'- aGGGCCca-GGGGGGUucgcguugccaGGCCAccuUCUCa- -3'
miRNA:   3'- -CCCGGucgCCCCCCA-----------CUGGU---AGAGcc -5'
28936 3' -61.5 NC_006146.1 + 20834 0.67 0.693347
Target:  5'- aGGGCCca-GGGGGGUucgcguugccaGGCCAccuUCUCa- -3'
miRNA:   3'- -CCCGGucgCCCCCCA-----------CUGGU---AGAGcc -5'
28936 3' -61.5 NC_006146.1 + 26989 0.67 0.693347
Target:  5'- aGGGCCca-GGGGGGUucgcguugccaGGCCAccuUCUCa- -3'
miRNA:   3'- -CCCGGucgCCCCCCA-----------CUGGU---AGAGcc -5'
28936 3' -61.5 NC_006146.1 + 23912 0.67 0.693347
Target:  5'- aGGGCCca-GGGGGGUucgcguugccaGGCCAccuUCUCa- -3'
miRNA:   3'- -CCCGGucgCCCCCCA-----------CUGGU---AGAGcc -5'
28936 3' -61.5 NC_006146.1 + 44211 0.67 0.693347
Target:  5'- -aGCCGGgGGcGGugccuuGGUGACCGUCUCc- -3'
miRNA:   3'- ccCGGUCgCC-CC------CCACUGGUAGAGcc -5'
28936 3' -61.5 NC_006146.1 + 114212 0.67 0.693347
Target:  5'- cGGGCCGGa-GGGGGUagcagcccGGCgAUC-CGGc -3'
miRNA:   3'- -CCCGGUCgcCCCCCA--------CUGgUAGaGCC- -5'
28936 3' -61.5 NC_006146.1 + 14678 0.67 0.693347
Target:  5'- aGGGCCca-GGGGGGUucgcguugccaGGCCAccuUCUCa- -3'
miRNA:   3'- -CCCGGucgCCCCCCA-----------CUGGU---AGAGcc -5'
28936 3' -61.5 NC_006146.1 + 44768 0.67 0.683803
Target:  5'- gGGGcCCGGCGGGcGGG-GAacCCAggcCGGg -3'
miRNA:   3'- -CCC-GGUCGCCC-CCCaCU--GGUagaGCC- -5'
28936 3' -61.5 NC_006146.1 + 52970 0.67 0.683803
Target:  5'- uGGCCcuccGCGGGGcGGggcGGgCGUCUCGa -3'
miRNA:   3'- cCCGGu---CGCCCC-CCa--CUgGUAGAGCc -5'
28936 3' -61.5 NC_006146.1 + 112518 0.67 0.683803
Target:  5'- gGGGCCGGUGGagggccuGGGUcACCucgaaCUCGGa -3'
miRNA:   3'- -CCCGGUCGCCc------CCCAcUGGua---GAGCC- -5'
28936 3' -61.5 NC_006146.1 + 54013 0.67 0.682846
Target:  5'- aGGGCCGGCaccaGGuggcgccuccggaGGGcGGCCAUgUCGGc -3'
miRNA:   3'- -CCCGGUCGc---CC-------------CCCaCUGGUAgAGCC- -5'
28936 3' -61.5 NC_006146.1 + 165806 0.67 0.674221
Target:  5'- cGGCCGGCuaGGGGGGcgucccUGGCCGcg-UGGa -3'
miRNA:   3'- cCCGGUCG--CCCCCC------ACUGGUagaGCC- -5'
28936 3' -61.5 NC_006146.1 + 42767 0.67 0.674221
Target:  5'- aGGGCCgacaggugcaGGCGGcGcGUGGCCGcCUCGGc -3'
miRNA:   3'- -CCCGG----------UCGCCcCcCACUGGUaGAGCC- -5'
28936 3' -61.5 NC_006146.1 + 114224 0.67 0.673261
Target:  5'- aGGGCCAGCcccaGGGGgcccggcaccucaGGgagGGCCAgCUCGu -3'
miRNA:   3'- -CCCGGUCG----CCCC-------------CCa--CUGGUaGAGCc -5'
28936 3' -61.5 NC_006146.1 + 45049 0.67 0.654971
Target:  5'- aGGGCCucGCGGGccuuGGGcuugaUGACCGg-UCGGa -3'
miRNA:   3'- -CCCGGu-CGCCC----CCC-----ACUGGUagAGCC- -5'
28936 3' -61.5 NC_006146.1 + 14819 0.67 0.654971
Target:  5'- cGGGCCGGaGGaGGGc-ACgGUCUCGGg -3'
miRNA:   3'- -CCCGGUCgCCcCCCacUGgUAGAGCC- -5'
28936 3' -61.5 NC_006146.1 + 12855 0.67 0.654971
Target:  5'- aGGcGCCuggGGCGaGGcuGGGUGGCUgggcaggccggGUCUCGGg -3'
miRNA:   3'- -CC-CGG---UCGC-CC--CCCACUGG-----------UAGAGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.