miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28936 5' -56 NC_006146.1 + 42683 0.67 0.891689
Target:  5'- gGUgGGCUGCCUgaggcuggcagagcCCCCCAGCg----- -3'
miRNA:   3'- gCGgCUGAUGGA--------------GGGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 155609 0.67 0.886971
Target:  5'- -uCCGGCcccuCCUCCCCCucGCUccgGUUCAg -3'
miRNA:   3'- gcGGCUGau--GGAGGGGGu-CGA---UAAGU- -5'
28936 5' -56 NC_006146.1 + 167519 0.67 0.886971
Target:  5'- gGCUGGCgccggGCCgcgCCCCCGGCc----- -3'
miRNA:   3'- gCGGCUGa----UGGa--GGGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 168451 0.67 0.886971
Target:  5'- gGCUGGCgccggGCCgcgCCCCCGGCc----- -3'
miRNA:   3'- gCGGCUGa----UGGa--GGGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 169383 0.67 0.886971
Target:  5'- gGCUGGCgccggGCCgcgCCCCCGGCc----- -3'
miRNA:   3'- gCGGCUGa----UGGa--GGGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 43055 0.67 0.886971
Target:  5'- aCGCCGGCUGCCcaagCCCaCCcuccaggggaGGCUGgaggcggauuUUCAg -3'
miRNA:   3'- -GCGGCUGAUGGa---GGG-GG----------UCGAU----------AAGU- -5'
28936 5' -56 NC_006146.1 + 32569 0.67 0.886971
Target:  5'- gGUgGGCUGCauauUCCCgCCAGCUugcaGUUCAc -3'
miRNA:   3'- gCGgCUGAUGg---AGGG-GGUCGA----UAAGU- -5'
28936 5' -56 NC_006146.1 + 170314 0.67 0.886971
Target:  5'- gGCUGGCgccggGCCgcgCCCCCGGCc----- -3'
miRNA:   3'- gCGGCUGa----UGGa--GGGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 165684 0.67 0.880042
Target:  5'- gGCCGGCaaggACCUgcaCCCCUAGCUc---- -3'
miRNA:   3'- gCGGCUGa---UGGA---GGGGGUCGAuaagu -5'
28936 5' -56 NC_006146.1 + 22959 0.67 0.880042
Target:  5'- gGCCGGCUGCUaUCUCCUGGCg----- -3'
miRNA:   3'- gCGGCUGAUGG-AGGGGGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 73662 0.67 0.880042
Target:  5'- aGCCaGCcACCuugugUCCCCCAGCUGg--- -3'
miRNA:   3'- gCGGcUGaUGG-----AGGGGGUCGAUaagu -5'
28936 5' -56 NC_006146.1 + 122880 0.68 0.857964
Target:  5'- aGCCGGCccgccgUGCCUCCCCC-GCc----- -3'
miRNA:   3'- gCGGCUG------AUGGAGGGGGuCGauaagu -5'
28936 5' -56 NC_006146.1 + 101199 0.68 0.850193
Target:  5'- aCGCUGGuCU-UCUCCCUCAGCgUGUUCc -3'
miRNA:   3'- -GCGGCU-GAuGGAGGGGGUCG-AUAAGu -5'
28936 5' -56 NC_006146.1 + 144621 0.68 0.834071
Target:  5'- uGCCGGCc-CCUCCaCCCAGgCUaAUUCc -3'
miRNA:   3'- gCGGCUGauGGAGG-GGGUC-GA-UAAGu -5'
28936 5' -56 NC_006146.1 + 112902 0.68 0.834071
Target:  5'- gGCCGAg-ACCcgggCCUCCAGCUcgUCc -3'
miRNA:   3'- gCGGCUgaUGGa---GGGGGUCGAuaAGu -5'
28936 5' -56 NC_006146.1 + 150338 0.68 0.825734
Target:  5'- gGCCGGCUAgucugugcuCCUCUUCCGGCguuaUCAu -3'
miRNA:   3'- gCGGCUGAU---------GGAGGGGGUCGaua-AGU- -5'
28936 5' -56 NC_006146.1 + 2681 0.68 0.817223
Target:  5'- gCGCCGGCc-CCUCCCgCCGGCc----- -3'
miRNA:   3'- -GCGGCUGauGGAGGG-GGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 3613 0.68 0.817223
Target:  5'- gCGCCGGCc-CCUCCCgCCGGCc----- -3'
miRNA:   3'- -GCGGCUGauGGAGGG-GGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 817 0.68 0.817223
Target:  5'- gCGCCGGCc-CCUCCCgCCGGCc----- -3'
miRNA:   3'- -GCGGCUGauGGAGGG-GGUCGauaagu -5'
28936 5' -56 NC_006146.1 + 1749 0.68 0.817223
Target:  5'- gCGCCGGCc-CCUCCCgCCGGCc----- -3'
miRNA:   3'- -GCGGCUGauGGAGGG-GGUCGauaagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.