miRNA display CGI


Results 1 - 20 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28937 3' -65.1 NC_006146.1 + 63425 0.66 0.559857
Target:  5'- gGCGgCCCUC-AGCgCGGCCaugcGCCACa -3'
miRNA:   3'- -UGCgGGGGGaUCG-GCCGGca--CGGUGg -5'
28937 3' -65.1 NC_006146.1 + 44264 0.66 0.559857
Target:  5'- uUGCCCCUgcgGGCCccgGGgUGUGCcCACCg -3'
miRNA:   3'- uGCGGGGGga-UCGG---CCgGCACG-GUGG- -5'
28937 3' -65.1 NC_006146.1 + 29268 0.66 0.559857
Target:  5'- aGCGUCCCCCgcAGCCGcCCagucucUGCCuCCa -3'
miRNA:   3'- -UGCGGGGGGa-UCGGCcGGc-----ACGGuGG- -5'
28937 3' -65.1 NC_006146.1 + 105827 0.66 0.559857
Target:  5'- -gGCCCCuCCU-GCC--CCGcGCCGCCg -3'
miRNA:   3'- ugCGGGG-GGAuCGGccGGCaCGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 67189 0.66 0.559857
Target:  5'- cUGCUCCUugggauuccaCUGGCCguGGCCG-GUCGCCu -3'
miRNA:   3'- uGCGGGGG----------GAUCGG--CCGGCaCGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 20034 0.66 0.559857
Target:  5'- aGCGUCCCCCgcAGCCGcCCagucucUGCCuCCa -3'
miRNA:   3'- -UGCGGGGGGa-UCGGCcGGc-----ACGGuGG- -5'
28937 3' -65.1 NC_006146.1 + 13879 0.66 0.559857
Target:  5'- aGCGUCCCCCgcAGCCGcCCagucucUGCCuCCa -3'
miRNA:   3'- -UGCGGGGGGa-UCGGCcGGc-----ACGGuGG- -5'
28937 3' -65.1 NC_006146.1 + 21841 0.66 0.559857
Target:  5'- -gGCCCUCgaGGCCucacagcccaGGCCaG-GCCACCu -3'
miRNA:   3'- ugCGGGGGgaUCGG----------CCGG-CaCGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 26190 0.66 0.559857
Target:  5'- aGCGUCCCCCgcAGCCGcCCagucucUGCCuCCa -3'
miRNA:   3'- -UGCGGGGGGa-UCGGCcGGc-----ACGGuGG- -5'
28937 3' -65.1 NC_006146.1 + 15685 0.66 0.559857
Target:  5'- -gGCCCUCgaGGCCucacagcccaGGCCaG-GCCACCu -3'
miRNA:   3'- ugCGGGGGgaUCGG----------CCGG-CaCGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 18763 0.66 0.559857
Target:  5'- -gGCCCUCgaGGCCucacagcccaGGCCaG-GCCACCu -3'
miRNA:   3'- ugCGGGGGgaUCGG----------CCGG-CaCGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 27996 0.66 0.559857
Target:  5'- -gGCCCUCgaGGCCucacagcccaGGCCaG-GCCACCu -3'
miRNA:   3'- ugCGGGGGgaUCGG----------CCGG-CaCGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 23112 0.66 0.559857
Target:  5'- aGCGUCCCCCgcAGCCGcCCagucucUGCCuCCa -3'
miRNA:   3'- -UGCGGGGGGa-UCGGCcGGc-----ACGGuGG- -5'
28937 3' -65.1 NC_006146.1 + 12606 0.66 0.559857
Target:  5'- -gGCCCUCgaGGCCucacagcccaGGCCaG-GCCACCu -3'
miRNA:   3'- ugCGGGGGgaUCGG----------CCGG-CaCGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 54382 0.66 0.559857
Target:  5'- uACGUCUUCCUA-CCGGCC-UG-CACCa -3'
miRNA:   3'- -UGCGGGGGGAUcGGCCGGcACgGUGG- -5'
28937 3' -65.1 NC_006146.1 + 57904 0.66 0.557043
Target:  5'- gGCGCCUugUCCaGgacaugcagagggcGCUGGCCGgcGCCGCCa -3'
miRNA:   3'- -UGCGGG--GGGaU--------------CGGCCGGCa-CGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 119104 0.66 0.551426
Target:  5'- cCGCCCUCCUgaucaaguGGCUGGaCuCGgcucugggcagagagGCCACCu -3'
miRNA:   3'- uGCGGGGGGA--------UCGGCC-G-GCa--------------CGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 20199 0.66 0.551426
Target:  5'- cUGUCCCCCgcaGGCCaGGCCcuccguccucccugGCCACUc -3'
miRNA:   3'- uGCGGGGGGa--UCGG-CCGGca------------CGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 29433 0.66 0.551426
Target:  5'- cUGUCCCCCgcaGGCCaGGCCcuccguccucccugGCCACUc -3'
miRNA:   3'- uGCGGGGGGa--UCGG-CCGGca------------CGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 26355 0.66 0.551426
Target:  5'- cUGUCCCCCgcaGGCCaGGCCcuccguccucccugGCCACUc -3'
miRNA:   3'- uGCGGGGGGa--UCGG-CCGGca------------CGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.