miRNA display CGI


Results 1 - 20 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28937 3' -65.1 NC_006146.1 + 93080 0.66 0.550492
Target:  5'- cCGCCCCCCUccGCCGuCC-UGUC-CCa -3'
miRNA:   3'- uGCGGGGGGAu-CGGCcGGcACGGuGG- -5'
28937 3' -65.1 NC_006146.1 + 33410 0.66 0.550492
Target:  5'- -gGCCCgCCUGGgCaccGCUGcGCCGCCg -3'
miRNA:   3'- ugCGGGgGGAUCgGc--CGGCaCGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 56562 0.66 0.501775
Target:  5'- -gGCCCCCgUccaccuccgucagGGgCGGCCGggcgccgagcccGCCGCCg -3'
miRNA:   3'- ugCGGGGGgA-------------UCgGCCGGCa-----------CGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 129077 0.66 0.541175
Target:  5'- -aGCCCCCgCgacauccGGCCuGUCGUGCagaaACCg -3'
miRNA:   3'- ugCGGGGG-Ga------UCGGcCGGCACGg---UGG- -5'
28937 3' -65.1 NC_006146.1 + 55742 0.66 0.549558
Target:  5'- cACGCCCaagaucuccaccgCCCggcGGCgGGCCaGgggcagcgagGCCACCa -3'
miRNA:   3'- -UGCGGG-------------GGGa--UCGgCCGG-Ca---------CGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 117904 0.66 0.541175
Target:  5'- uCGaCCCCCgcGGCCacGGCCGgcagGuCCGCCu -3'
miRNA:   3'- uGCgGGGGGa-UCGG--CCGGCa---C-GGUGG- -5'
28937 3' -65.1 NC_006146.1 + 132733 0.66 0.513562
Target:  5'- gUGUCCCCagUAGCCccgguucuccggGGCCGgaUGCCGCg -3'
miRNA:   3'- uGCGGGGGg-AUCGG------------CCGGC--ACGGUGg -5'
28937 3' -65.1 NC_006146.1 + 126327 0.66 0.541175
Target:  5'- uCGUCCUCCUGGCauuuccGCCa-GCCACCc -3'
miRNA:   3'- uGCGGGGGGAUCGgc----CGGcaCGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 134672 0.66 0.522706
Target:  5'- cCGCCCUgccuCCUccCCGGCCG-GCUugCg -3'
miRNA:   3'- uGCGGGG----GGAucGGCCGGCaCGGugG- -5'
28937 3' -65.1 NC_006146.1 + 34042 0.66 0.504485
Target:  5'- -gGUCCCggggCCUAuGCCGGCCGgggGUC-CCg -3'
miRNA:   3'- ugCGGGG----GGAU-CGGCCGGCa--CGGuGG- -5'
28937 3' -65.1 NC_006146.1 + 54382 0.66 0.559857
Target:  5'- uACGUCUUCCUA-CCGGCC-UG-CACCa -3'
miRNA:   3'- -UGCGGGGGGAUcGGCCGGcACgGUGG- -5'
28937 3' -65.1 NC_006146.1 + 14043 0.66 0.551426
Target:  5'- cUGUCCCCCgcaGGCCaGGCCcuccguccucccugGCCACUc -3'
miRNA:   3'- uGCGGGGGGa--UCGG-CCGGca------------CGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 46441 0.66 0.517212
Target:  5'- -gGCCCCCaggaaggcggcggcgUaGGCCGGaugCGUGCCgACCa -3'
miRNA:   3'- ugCGGGGG---------------GaUCGGCCg--GCACGG-UGG- -5'
28937 3' -65.1 NC_006146.1 + 2419 0.66 0.526381
Target:  5'- -gGCCCCCCgaccguggacgugaGGCCGGaUC-UGCgCACCg -3'
miRNA:   3'- ugCGGGGGGa-------------UCGGCC-GGcACG-GUGG- -5'
28937 3' -65.1 NC_006146.1 + 149616 0.66 0.504485
Target:  5'- cCGCCUCCUUuacCCGGgCGU-CCGCCa -3'
miRNA:   3'- uGCGGGGGGAuc-GGCCgGCAcGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 14952 0.66 0.531911
Target:  5'- uGCGCCCggggccaccucCCCgucaucGCCGGCUccGCCAUCc -3'
miRNA:   3'- -UGCGGG-----------GGGau----CGGCCGGcaCGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 159745 0.66 0.522706
Target:  5'- gGCGCUCCUUgaauGCCu-CCGUGaCCACCa -3'
miRNA:   3'- -UGCGGGGGGau--CGGccGGCAC-GGUGG- -5'
28937 3' -65.1 NC_006146.1 + 23277 0.66 0.551426
Target:  5'- cUGUCCCCCgcaGGCCaGGCCcuccguccucccugGCCACUc -3'
miRNA:   3'- uGCGGGGGGa--UCGG-CCGGca------------CGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 17121 0.66 0.551426
Target:  5'- cUGUCCCCCgcaGGCCaGGCCcuccguccucccugGCCACUc -3'
miRNA:   3'- uGCGGGGGGa--UCGG-CCGGca------------CGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 20199 0.66 0.551426
Target:  5'- cUGUCCCCCgcaGGCCaGGCCcuccguccucccugGCCACUc -3'
miRNA:   3'- uGCGGGGGGa--UCGG-CCGGca------------CGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.