miRNA display CGI


Results 1 - 20 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28937 3' -65.1 NC_006146.1 + 5101 1.1 0.000415
Target:  5'- gACGCCCCCCUAGCCGGCCGUGCCACCg -3'
miRNA:   3'- -UGCGGGGGGAUCGGCCGGCACGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 143550 0.81 0.060694
Target:  5'- gACGCCCCCC-GGCCuuGCCGcGCCACCc -3'
miRNA:   3'- -UGCGGGGGGaUCGGc-CGGCaCGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 78805 0.78 0.095132
Target:  5'- cCGCCCCCCagcagcAGCCccaGGCCGgGCCGCCc -3'
miRNA:   3'- uGCGGGGGGa-----UCGG---CCGGCaCGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 3533 0.78 0.099945
Target:  5'- -aGCCCCCUcAGCCcccGGCCGgcGCCGCCg -3'
miRNA:   3'- ugCGGGGGGaUCGG---CCGGCa-CGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 2601 0.78 0.099945
Target:  5'- -aGCCCCCUcAGCCcccGGCCGgcGCCGCCg -3'
miRNA:   3'- ugCGGGGGGaUCGG---CCGGCa-CGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 1669 0.78 0.099945
Target:  5'- -aGCCCCCUcAGCCcccGGCCGgcGCCGCCg -3'
miRNA:   3'- ugCGGGGGGaUCGG---CCGGCa-CGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 738 0.78 0.099945
Target:  5'- -aGCCCCCUcAGCCcccGGCCGgcGCCGCCg -3'
miRNA:   3'- ugCGGGGGGaUCGG---CCGGCa-CGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 3820 0.78 0.102438
Target:  5'- cACGCCCCCCUcacuuuuuuggAGCCGGCgGguaagggggGUCGCCc -3'
miRNA:   3'- -UGCGGGGGGA-----------UCGGCCGgCa--------CGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 115210 0.77 0.104731
Target:  5'- -aGCCCCCCggcGgCGGCCGUGCCcgugcugGCCu -3'
miRNA:   3'- ugCGGGGGGau-CgGCCGGCACGG-------UGG- -5'
28937 3' -65.1 NC_006146.1 + 44718 0.77 0.113003
Target:  5'- -gGCCCCCgCUGGCCGGCCugaugcggugGCCGCg -3'
miRNA:   3'- ugCGGGGG-GAUCGGCCGGca--------CGGUGg -5'
28937 3' -65.1 NC_006146.1 + 117858 0.76 0.133974
Target:  5'- cCGCCCCCCUuaccucucGGCggCGGCCGcgGCCAgCCg -3'
miRNA:   3'- uGCGGGGGGA--------UCG--GCCGGCa-CGGU-GG- -5'
28937 3' -65.1 NC_006146.1 + 117713 0.76 0.133974
Target:  5'- cCGCCCCCCaaggccggGGCCgaGGCCGagccuuccgGCCACCg -3'
miRNA:   3'- uGCGGGGGGa-------UCGG--CCGGCa--------CGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 151908 0.76 0.137248
Target:  5'- -gGCCCCCaCUGGggucuggcuCCGGCCcUGCCGCCc -3'
miRNA:   3'- ugCGGGGG-GAUC---------GGCCGGcACGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 127567 0.76 0.140595
Target:  5'- uGCGCCUgcuggCCCUGGgCGGCCGagGCCGCg -3'
miRNA:   3'- -UGCGGG-----GGGAUCgGCCGGCa-CGGUGg -5'
28937 3' -65.1 NC_006146.1 + 136823 0.75 0.147515
Target:  5'- cUGCCCCCCgggacccCCGGCCccGUGCCACg -3'
miRNA:   3'- uGCGGGGGGauc----GGCCGG--CACGGUGg -5'
28937 3' -65.1 NC_006146.1 + 153194 0.75 0.154744
Target:  5'- uACGUCCCCCaGGCgcuUGGCCGccacggGCCGCCc -3'
miRNA:   3'- -UGCGGGGGGaUCG---GCCGGCa-----CGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 16237 0.74 0.16462
Target:  5'- aGCGCCCCCCgccaccacggugcAGCCGGCgGcaGCgCGCCa -3'
miRNA:   3'- -UGCGGGGGGa------------UCGGCCGgCa-CG-GUGG- -5'
28937 3' -65.1 NC_006146.1 + 121417 0.74 0.166189
Target:  5'- cACGCCgCCCCUGGCCGacaCCGcgGCCcucACCa -3'
miRNA:   3'- -UGCGG-GGGGAUCGGCc--GGCa-CGG---UGG- -5'
28937 3' -65.1 NC_006146.1 + 166396 0.74 0.174236
Target:  5'- cAC-CCCCCgCUGGCCcGCCaGUGCCAUCu -3'
miRNA:   3'- -UGcGGGGG-GAUCGGcCGG-CACGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 46725 0.74 0.180074
Target:  5'- aGCGCCCCCCUugcgaaucAGCUcuucuacuacauuggGGCCaUGCUGCCa -3'
miRNA:   3'- -UGCGGGGGGA--------UCGG---------------CCGGcACGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.