miRNA display CGI


Results 21 - 40 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28937 3' -65.1 NC_006146.1 + 29433 0.66 0.551426
Target:  5'- cUGUCCCCCgcaGGCCaGGCCcuccguccucccugGCCACUc -3'
miRNA:   3'- uGCGGGGGGa--UCGG-CCGGca------------CGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 14043 0.66 0.551426
Target:  5'- cUGUCCCCCgcaGGCCaGGCCcuccguccucccugGCCACUc -3'
miRNA:   3'- uGCGGGGGGa--UCGG-CCGGca------------CGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 119104 0.66 0.551426
Target:  5'- cCGCCCUCCUgaucaaguGGCUGGaCuCGgcucugggcagagagGCCACCu -3'
miRNA:   3'- uGCGGGGGGA--------UCGGCC-G-GCa--------------CGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 33410 0.66 0.550492
Target:  5'- -gGCCCgCCUGGgCaccGCUGcGCCGCCg -3'
miRNA:   3'- ugCGGGgGGAUCgGc--CGGCaCGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 169060 0.66 0.550492
Target:  5'- gUGUgCCUgUGGCaccCGGCUGUGCCccGCCa -3'
miRNA:   3'- uGCGgGGGgAUCG---GCCGGCACGG--UGG- -5'
28937 3' -65.1 NC_006146.1 + 93080 0.66 0.550492
Target:  5'- cCGCCCCCCUccGCCGuCC-UGUC-CCa -3'
miRNA:   3'- uGCGGGGGGAu-CGGCcGGcACGGuGG- -5'
28937 3' -65.1 NC_006146.1 + 123237 0.66 0.550492
Target:  5'- cACGagaCCCUGGCCgccgcgcugGGCCGgGCCGCg -3'
miRNA:   3'- -UGCgggGGGAUCGG---------CCGGCaCGGUGg -5'
28937 3' -65.1 NC_006146.1 + 55742 0.66 0.549558
Target:  5'- cACGCCCaagaucuccaccgCCCggcGGCgGGCCaGgggcagcgagGCCACCa -3'
miRNA:   3'- -UGCGGG-------------GGGa--UCGgCCGG-Ca---------CGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 36213 0.66 0.546759
Target:  5'- -gGCUCCCCgggagcgcaAGCCGGCCGgggaggaggcaggGCgGCUu -3'
miRNA:   3'- ugCGGGGGGa--------UCGGCCGGCa------------CGgUGG- -5'
28937 3' -65.1 NC_006146.1 + 125071 0.66 0.546759
Target:  5'- gACGCCauCCCCgucuccgucuucgAGgCGGCCGUGgCGgCg -3'
miRNA:   3'- -UGCGG--GGGGa------------UCgGCCGGCACgGUgG- -5'
28937 3' -65.1 NC_006146.1 + 101196 0.66 0.544896
Target:  5'- uGCGCCCCUCggAGCUGaagauccaccuggcaGCCuucagauaUGCCACCc -3'
miRNA:   3'- -UGCGGGGGGa-UCGGC---------------CGGc-------ACGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 74258 0.66 0.544896
Target:  5'- cCGUCUCCCcgGGCUGGCCaaagagccgguugcgGU-CCACCa -3'
miRNA:   3'- uGCGGGGGGa-UCGGCCGG---------------CAcGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 126327 0.66 0.541175
Target:  5'- uCGUCCUCCUGGCauuuccGCCa-GCCACCc -3'
miRNA:   3'- uGCGGGGGGAUCGgc----CGGcaCGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 119868 0.66 0.541175
Target:  5'- gAUGCCUCCgUGGgauCCGGCCucGUacGCUACCu -3'
miRNA:   3'- -UGCGGGGGgAUC---GGCCGG--CA--CGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 117904 0.66 0.541175
Target:  5'- uCGaCCCCCgcGGCCacGGCCGgcagGuCCGCCu -3'
miRNA:   3'- uGCgGGGGGa-UCGG--CCGGCa---C-GGUGG- -5'
28937 3' -65.1 NC_006146.1 + 129077 0.66 0.541175
Target:  5'- -aGCCCCCgCgacauccGGCCuGUCGUGCagaaACCg -3'
miRNA:   3'- ugCGGGGG-Ga------UCGGcCGGCACGg---UGG- -5'
28937 3' -65.1 NC_006146.1 + 106465 0.66 0.531911
Target:  5'- -aGCCCCUCUGucucCUGGCagCGUacGCCGCCg -3'
miRNA:   3'- ugCGGGGGGAUc---GGCCG--GCA--CGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 3260 0.66 0.531911
Target:  5'- -gGUCCCCC-GGCaCGcGCCGgGCC-CCg -3'
miRNA:   3'- ugCGGGGGGaUCG-GC-CGGCaCGGuGG- -5'
28937 3' -65.1 NC_006146.1 + 2328 0.66 0.531911
Target:  5'- -gGUCCCCC-GGCaCGcGCCGgGCC-CCg -3'
miRNA:   3'- ugCGGGGGGaUCG-GC-CGGCaCGGuGG- -5'
28937 3' -65.1 NC_006146.1 + 1396 0.66 0.531911
Target:  5'- -gGUCCCCC-GGCaCGcGCCGgGCC-CCg -3'
miRNA:   3'- ugCGGGGGGaUCG-GC-CGGCaCGGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.