miRNA display CGI


Results 1 - 20 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28937 3' -65.1 NC_006146.1 + 380 0.66 0.531911
Target:  5'- cGCGCCCCCUcaGGCCccGCCc-GCCGCg -3'
miRNA:   3'- -UGCGGGGGGa-UCGGc-CGGcaCGGUGg -5'
28937 3' -65.1 NC_006146.1 + 465 0.66 0.531911
Target:  5'- -gGUCCCCC-GGCaCGcGCCGgGCC-CCg -3'
miRNA:   3'- ugCGGGGGGaUCG-GC-CGGCaCGGuGG- -5'
28937 3' -65.1 NC_006146.1 + 505 0.66 0.513562
Target:  5'- cCGCCCCCgaGGCCcccaggggaGGCCcG-GCCuCCa -3'
miRNA:   3'- uGCGGGGGgaUCGG---------CCGG-CaCGGuGG- -5'
28937 3' -65.1 NC_006146.1 + 738 0.78 0.099945
Target:  5'- -aGCCCCCUcAGCCcccGGCCGgcGCCGCCg -3'
miRNA:   3'- ugCGGGGGGaUCGG---CCGGCa-CGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 804 0.72 0.240785
Target:  5'- gGC-CCCCCCUGcggcGCCGGCCccucCCGCCg -3'
miRNA:   3'- -UGcGGGGGGAU----CGGCCGGcac-GGUGG- -5'
28937 3' -65.1 NC_006146.1 + 914 0.7 0.334229
Target:  5'- cCGCCCCCCgggaccccgGGCgCGcGCCG-GCCucCCg -3'
miRNA:   3'- uGCGGGGGGa--------UCG-GC-CGGCaCGGu-GG- -5'
28937 3' -65.1 NC_006146.1 + 1396 0.66 0.531911
Target:  5'- -gGUCCCCC-GGCaCGcGCCGgGCC-CCg -3'
miRNA:   3'- ugCGGGGGGaUCG-GC-CGGCaCGGuGG- -5'
28937 3' -65.1 NC_006146.1 + 1436 0.66 0.513562
Target:  5'- cCGCCCCCgaGGCCcccaggggaGGCCcG-GCCuCCa -3'
miRNA:   3'- uGCGGGGGgaUCGG---------CCGG-CaCGGuGG- -5'
28937 3' -65.1 NC_006146.1 + 1669 0.78 0.099945
Target:  5'- -aGCCCCCUcAGCCcccGGCCGgcGCCGCCg -3'
miRNA:   3'- ugCGGGGGGaUCGG---CCGGCa-CGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 1735 0.71 0.263357
Target:  5'- gGC-CCCCCCUGcaggcGCCGGCCccucCCGCCg -3'
miRNA:   3'- -UGcGGGGGGAU-----CGGCCGGcac-GGUGG- -5'
28937 3' -65.1 NC_006146.1 + 1846 0.7 0.334229
Target:  5'- cCGCCCCCCgggaccccgGGCgCGcGCCG-GCCucCCg -3'
miRNA:   3'- uGCGGGGGGa--------UCG-GC-CGGCaCGGu-GG- -5'
28937 3' -65.1 NC_006146.1 + 2328 0.66 0.531911
Target:  5'- -gGUCCCCC-GGCaCGcGCCGgGCC-CCg -3'
miRNA:   3'- ugCGGGGGGaUCG-GC-CGGCaCGGuGG- -5'
28937 3' -65.1 NC_006146.1 + 2368 0.66 0.513562
Target:  5'- cCGCCCCCgaGGCCcccaggggaGGCCcG-GCCuCCa -3'
miRNA:   3'- uGCGGGGGgaUCGG---------CCGG-CaCGGuGG- -5'
28937 3' -65.1 NC_006146.1 + 2419 0.66 0.526381
Target:  5'- -gGCCCCCCgaccguggacgugaGGCCGGaUC-UGCgCACCg -3'
miRNA:   3'- ugCGGGGGGa-------------UCGGCC-GGcACG-GUGG- -5'
28937 3' -65.1 NC_006146.1 + 2601 0.78 0.099945
Target:  5'- -aGCCCCCUcAGCCcccGGCCGgcGCCGCCg -3'
miRNA:   3'- ugCGGGGGGaUCGG---CCGGCa-CGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 2667 0.71 0.263357
Target:  5'- gGC-CCCCCCUGcaggcGCCGGCCccucCCGCCg -3'
miRNA:   3'- -UGcGGGGGGAU-----CGGCCGGcac-GGUGG- -5'
28937 3' -65.1 NC_006146.1 + 2778 0.7 0.334229
Target:  5'- cCGCCCCCCgggaccccgGGCgCGcGCCG-GCCucCCg -3'
miRNA:   3'- uGCGGGGGGa--------UCG-GC-CGGCaCGGu-GG- -5'
28937 3' -65.1 NC_006146.1 + 3260 0.66 0.531911
Target:  5'- -gGUCCCCC-GGCaCGcGCCGgGCC-CCg -3'
miRNA:   3'- ugCGGGGGGaUCG-GC-CGGCaCGGuGG- -5'
28937 3' -65.1 NC_006146.1 + 3300 0.66 0.513562
Target:  5'- cCGCCCCCgaGGCCcccaggggaGGCCcG-GCCuCCa -3'
miRNA:   3'- uGCGGGGGgaUCGG---------CCGG-CaCGGuGG- -5'
28937 3' -65.1 NC_006146.1 + 3533 0.78 0.099945
Target:  5'- -aGCCCCCUcAGCCcccGGCCGgcGCCGCCg -3'
miRNA:   3'- ugCGGGGGGaUCGG---CCGGCa-CGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.