miRNA display CGI


Results 1 - 20 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28937 3' -65.1 NC_006146.1 + 34178 0.72 0.240785
Target:  5'- uGCGCCCCC--AGCCGGaCCcugGUGCCAg- -3'
miRNA:   3'- -UGCGGGGGgaUCGGCC-GG---CACGGUgg -5'
28937 3' -65.1 NC_006146.1 + 156091 0.73 0.200489
Target:  5'- gUGCCCUCCUccGGcCCGGCCG-GCCucuCCu -3'
miRNA:   3'- uGCGGGGGGA--UC-GGCCGGCaCGGu--GG- -5'
28937 3' -65.1 NC_006146.1 + 43255 0.73 0.207091
Target:  5'- gGCGCCagcgcggCCUggacaagaggcagcgGGCCGGCgGUGCCGCCc -3'
miRNA:   3'- -UGCGGgg-----GGA---------------UCGGCCGgCACGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 52920 0.73 0.209978
Target:  5'- -gGCCCCCCgggggcGCUGGCCucGUccGCCGCCu -3'
miRNA:   3'- ugCGGGGGGau----CGGCCGG--CA--CGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 136701 0.73 0.209978
Target:  5'- cUGCCCCgCUccggcgggggguGGCCGGCCGcUGCCGgguCCg -3'
miRNA:   3'- uGCGGGGgGA------------UCGGCCGGC-ACGGU---GG- -5'
28937 3' -65.1 NC_006146.1 + 46764 0.72 0.224421
Target:  5'- uCGCCUCCCgaccccgggcggaUGGCUGGCCG-GCCGgCg -3'
miRNA:   3'- uGCGGGGGG-------------AUCGGCCGGCaCGGUgG- -5'
28937 3' -65.1 NC_006146.1 + 78595 0.72 0.2354
Target:  5'- cCGCCCCCCagcagcAGCCccaGGCCGgGcCCGCCc -3'
miRNA:   3'- uGCGGGGGGa-----UCGG---CCGGCaC-GGUGG- -5'
28937 3' -65.1 NC_006146.1 + 78655 0.72 0.2354
Target:  5'- cCGCCCCCCagcagcAGCCacaGGCCGgGcCCGCCc -3'
miRNA:   3'- uGCGGGGGGa-----UCGG---CCGGCaC-GGUGG- -5'
28937 3' -65.1 NC_006146.1 + 78715 0.72 0.2354
Target:  5'- cCGCCCCCCagcagcAGCCccaGGCCGgGcCCGCCc -3'
miRNA:   3'- uGCGGGGGGa-----UCGG---CCGGCaC-GGUGG- -5'
28937 3' -65.1 NC_006146.1 + 131060 0.73 0.200489
Target:  5'- -aGCCCCCgCcGGCCcacugugcGGCCGagGCCGCCg -3'
miRNA:   3'- ugCGGGGG-GaUCGG--------CCGGCa-CGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 126122 0.73 0.195886
Target:  5'- uGCGCCCCCCUgAGcCCGGCaCG-G-CACCc -3'
miRNA:   3'- -UGCGGGGGGA-UC-GGCCG-GCaCgGUGG- -5'
28937 3' -65.1 NC_006146.1 + 78893 0.74 0.191376
Target:  5'- cCGCCCCCCagcagcAGCCccaGGCCGgGcCCGCCa -3'
miRNA:   3'- uGCGGGGGGa-----UCGG---CCGGCaC-GGUGG- -5'
28937 3' -65.1 NC_006146.1 + 143550 0.81 0.060694
Target:  5'- gACGCCCCCC-GGCCuuGCCGcGCCACCc -3'
miRNA:   3'- -UGCGGGGGGaUCGGc-CGGCaCGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 78805 0.78 0.095132
Target:  5'- cCGCCCCCCagcagcAGCCccaGGCCGgGCCGCCc -3'
miRNA:   3'- uGCGGGGGGa-----UCGG---CCGGCaCGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 44718 0.77 0.113003
Target:  5'- -gGCCCCCgCUGGCCGGCCugaugcggugGCCGCg -3'
miRNA:   3'- ugCGGGGG-GAUCGGCCGGca--------CGGUGg -5'
28937 3' -65.1 NC_006146.1 + 151908 0.76 0.137248
Target:  5'- -gGCCCCCaCUGGggucuggcuCCGGCCcUGCCGCCc -3'
miRNA:   3'- ugCGGGGG-GAUC---------GGCCGGcACGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 153194 0.75 0.154744
Target:  5'- uACGUCCCCCaGGCgcuUGGCCGccacggGCCGCCc -3'
miRNA:   3'- -UGCGGGGGGaUCG---GCCGGCa-----CGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 160604 0.74 0.1822
Target:  5'- uUGCCCCCgaGGUCGGCCGccuggcaUGCCAgCu -3'
miRNA:   3'- uGCGGGGGgaUCGGCCGGC-------ACGGUgG- -5'
28937 3' -65.1 NC_006146.1 + 53014 0.74 0.182628
Target:  5'- -gGCCCUgggCCUcacgcGGCUGGCCGcgGCCGCCg -3'
miRNA:   3'- ugCGGGG---GGA-----UCGGCCGGCa-CGGUGG- -5'
28937 3' -65.1 NC_006146.1 + 112442 0.74 0.182628
Target:  5'- uGCGCCCCCU---CCGGCCGUggugGUCACUg -3'
miRNA:   3'- -UGCGGGGGGaucGGCCGGCA----CGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.