Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28937 | 5' | -58.9 | NC_006146.1 | + | 2294 | 0.66 | 0.806492 |
Target: 5'- ----cCGCUCGCCC-CUCgggucGCGGGACa -3' miRNA: 3'- aacuaGCGAGUGGGcGGGa----CGCUCUG- -5' |
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28937 | 5' | -58.9 | NC_006146.1 | + | 3226 | 0.66 | 0.806492 |
Target: 5'- ----cCGCUCGCCC-CUCgggucGCGGGACa -3' miRNA: 3'- aacuaGCGAGUGGGcGGGa----CGCUCUG- -5' |
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28937 | 5' | -58.9 | NC_006146.1 | + | 1362 | 0.66 | 0.806492 |
Target: 5'- ----cCGCUCGCCC-CUCgggucGCGGGACa -3' miRNA: 3'- aacuaGCGAGUGGGcGGGa----CGCUCUG- -5' |
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28937 | 5' | -58.9 | NC_006146.1 | + | 431 | 0.66 | 0.806492 |
Target: 5'- ----cCGCUCGCCC-CUCgggucGCGGGACa -3' miRNA: 3'- aacuaGCGAGUGGGcGGGa----CGCUCUG- -5' |
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28937 | 5' | -58.9 | NC_006146.1 | + | 128084 | 0.66 | 0.797684 |
Target: 5'- cUGAUC-CUggucUACaCGCUCUGCGAGACc -3' miRNA: 3'- aACUAGcGA----GUGgGCGGGACGCUCUG- -5' |
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28937 | 5' | -58.9 | NC_006146.1 | + | 29054 | 0.66 | 0.788729 |
Target: 5'- -cGGUUGUcC-CCCGaCUCUGUGAGACu -3' miRNA: 3'- aaCUAGCGaGuGGGC-GGGACGCUCUG- -5' |
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28937 | 5' | -58.9 | NC_006146.1 | + | 40233 | 0.66 | 0.779637 |
Target: 5'- cUGAUUGCacCGUCCGCCUacGCGAGGCu -3' miRNA: 3'- aACUAGCGa-GUGGGCGGGa-CGCUCUG- -5' |
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28937 | 5' | -58.9 | NC_006146.1 | + | 55351 | 0.66 | 0.779637 |
Target: 5'- -cGGUCGcCUCcagccCCCGCCaccgcgcGCGGGACg -3' miRNA: 3'- aaCUAGC-GAGu----GGGCGGga-----CGCUCUG- -5' |
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28937 | 5' | -58.9 | NC_006146.1 | + | 3145 | 0.66 | 0.779637 |
Target: 5'- aUGcgCGCcCACCCGgcCCCUGCGcccuGAUc -3' miRNA: 3'- aACuaGCGaGUGGGC--GGGACGCu---CUG- -5' |
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28937 | 5' | -58.9 | NC_006146.1 | + | 23499 | 0.66 | 0.770416 |
Target: 5'- gUGGgcUCGCUCugggagguGCCCGCCgUGaacuCGGGACu -3' miRNA: 3'- aACU--AGCGAG--------UGGGCGGgAC----GCUCUG- -5' |
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28937 | 5' | -58.9 | NC_006146.1 | + | 15972 | 0.66 | 0.761075 |
Target: 5'- cUGGgggCGUUC-CCUGCgCCUGCGAagGGCg -3' miRNA: 3'- aACUa--GCGAGuGGGCG-GGACGCU--CUG- -5' |
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28937 | 5' | -58.9 | NC_006146.1 | + | 28595 | 0.66 | 0.761075 |
Target: 5'- ----cCGCUucaCACCUGCCCUGUgGAGAa -3' miRNA: 3'- aacuaGCGA---GUGGGCGGGACG-CUCUg -5' |
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28937 | 5' | -58.9 | NC_006146.1 | + | 28940 | 0.66 | 0.761075 |
Target: 5'- ----cCGCccCGCCCGCCCgGCcaGAGACu -3' miRNA: 3'- aacuaGCGa-GUGGGCGGGaCG--CUCUG- -5' |
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28937 | 5' | -58.9 | NC_006146.1 | + | 154798 | 0.67 | 0.742067 |
Target: 5'- -gGAUCGCUCAgacUCUGCCa-GCaGAGACc -3' miRNA: 3'- aaCUAGCGAGU---GGGCGGgaCG-CUCUG- -5' |
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28937 | 5' | -58.9 | NC_006146.1 | + | 151720 | 0.67 | 0.742067 |
Target: 5'- -gGAUCGCUCAgacUCUGCCa-GCaGAGACc -3' miRNA: 3'- aaCUAGCGAGU---GGGCGGgaCG-CUCUG- -5' |
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28937 | 5' | -58.9 | NC_006146.1 | + | 148643 | 0.67 | 0.742067 |
Target: 5'- -gGAUCGCUCAgacUCUGCCa-GCaGAGACc -3' miRNA: 3'- aaCUAGCGAGU---GGGCGGgaCG-CUCUG- -5' |
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28937 | 5' | -58.9 | NC_006146.1 | + | 145565 | 0.67 | 0.742067 |
Target: 5'- -gGAUCGCUCAgacUCUGCCa-GCaGAGACc -3' miRNA: 3'- aaCUAGCGAGU---GGGCGGgaCG-CUCUG- -5' |
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28937 | 5' | -58.9 | NC_006146.1 | + | 142487 | 0.67 | 0.742067 |
Target: 5'- -gGAUCGCUCAgacUCUGCCa-GCaGAGACc -3' miRNA: 3'- aaCUAGCGAGU---GGGCGGgaCG-CUCUG- -5' |
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28937 | 5' | -58.9 | NC_006146.1 | + | 20293 | 0.67 | 0.742067 |
Target: 5'- -aGAUCGCcaagaUCGCCCacaucCCCUGC-AGGCg -3' miRNA: 3'- aaCUAGCG-----AGUGGGc----GGGACGcUCUG- -5' |
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28937 | 5' | -58.9 | NC_006146.1 | + | 157876 | 0.67 | 0.742067 |
Target: 5'- -gGAUCGCUCAgacUCUGCCa-GCaGAGACc -3' miRNA: 3'- aaCUAGCGAGU---GGGCGGgaCG-CUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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