miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28937 5' -58.9 NC_006146.1 + 2294 0.66 0.806492
Target:  5'- ----cCGCUCGCCC-CUCgggucGCGGGACa -3'
miRNA:   3'- aacuaGCGAGUGGGcGGGa----CGCUCUG- -5'
28937 5' -58.9 NC_006146.1 + 3226 0.66 0.806492
Target:  5'- ----cCGCUCGCCC-CUCgggucGCGGGACa -3'
miRNA:   3'- aacuaGCGAGUGGGcGGGa----CGCUCUG- -5'
28937 5' -58.9 NC_006146.1 + 1362 0.66 0.806492
Target:  5'- ----cCGCUCGCCC-CUCgggucGCGGGACa -3'
miRNA:   3'- aacuaGCGAGUGGGcGGGa----CGCUCUG- -5'
28937 5' -58.9 NC_006146.1 + 431 0.66 0.806492
Target:  5'- ----cCGCUCGCCC-CUCgggucGCGGGACa -3'
miRNA:   3'- aacuaGCGAGUGGGcGGGa----CGCUCUG- -5'
28937 5' -58.9 NC_006146.1 + 128084 0.66 0.797684
Target:  5'- cUGAUC-CUggucUACaCGCUCUGCGAGACc -3'
miRNA:   3'- aACUAGcGA----GUGgGCGGGACGCUCUG- -5'
28937 5' -58.9 NC_006146.1 + 29054 0.66 0.788729
Target:  5'- -cGGUUGUcC-CCCGaCUCUGUGAGACu -3'
miRNA:   3'- aaCUAGCGaGuGGGC-GGGACGCUCUG- -5'
28937 5' -58.9 NC_006146.1 + 40233 0.66 0.779637
Target:  5'- cUGAUUGCacCGUCCGCCUacGCGAGGCu -3'
miRNA:   3'- aACUAGCGa-GUGGGCGGGa-CGCUCUG- -5'
28937 5' -58.9 NC_006146.1 + 55351 0.66 0.779637
Target:  5'- -cGGUCGcCUCcagccCCCGCCaccgcgcGCGGGACg -3'
miRNA:   3'- aaCUAGC-GAGu----GGGCGGga-----CGCUCUG- -5'
28937 5' -58.9 NC_006146.1 + 3145 0.66 0.779637
Target:  5'- aUGcgCGCcCACCCGgcCCCUGCGcccuGAUc -3'
miRNA:   3'- aACuaGCGaGUGGGC--GGGACGCu---CUG- -5'
28937 5' -58.9 NC_006146.1 + 23499 0.66 0.770416
Target:  5'- gUGGgcUCGCUCugggagguGCCCGCCgUGaacuCGGGACu -3'
miRNA:   3'- aACU--AGCGAG--------UGGGCGGgAC----GCUCUG- -5'
28937 5' -58.9 NC_006146.1 + 15972 0.66 0.761075
Target:  5'- cUGGgggCGUUC-CCUGCgCCUGCGAagGGCg -3'
miRNA:   3'- aACUa--GCGAGuGGGCG-GGACGCU--CUG- -5'
28937 5' -58.9 NC_006146.1 + 28595 0.66 0.761075
Target:  5'- ----cCGCUucaCACCUGCCCUGUgGAGAa -3'
miRNA:   3'- aacuaGCGA---GUGGGCGGGACG-CUCUg -5'
28937 5' -58.9 NC_006146.1 + 28940 0.66 0.761075
Target:  5'- ----cCGCccCGCCCGCCCgGCcaGAGACu -3'
miRNA:   3'- aacuaGCGa-GUGGGCGGGaCG--CUCUG- -5'
28937 5' -58.9 NC_006146.1 + 154798 0.67 0.742067
Target:  5'- -gGAUCGCUCAgacUCUGCCa-GCaGAGACc -3'
miRNA:   3'- aaCUAGCGAGU---GGGCGGgaCG-CUCUG- -5'
28937 5' -58.9 NC_006146.1 + 151720 0.67 0.742067
Target:  5'- -gGAUCGCUCAgacUCUGCCa-GCaGAGACc -3'
miRNA:   3'- aaCUAGCGAGU---GGGCGGgaCG-CUCUG- -5'
28937 5' -58.9 NC_006146.1 + 148643 0.67 0.742067
Target:  5'- -gGAUCGCUCAgacUCUGCCa-GCaGAGACc -3'
miRNA:   3'- aaCUAGCGAGU---GGGCGGgaCG-CUCUG- -5'
28937 5' -58.9 NC_006146.1 + 145565 0.67 0.742067
Target:  5'- -gGAUCGCUCAgacUCUGCCa-GCaGAGACc -3'
miRNA:   3'- aaCUAGCGAGU---GGGCGGgaCG-CUCUG- -5'
28937 5' -58.9 NC_006146.1 + 142487 0.67 0.742067
Target:  5'- -gGAUCGCUCAgacUCUGCCa-GCaGAGACc -3'
miRNA:   3'- aaCUAGCGAGU---GGGCGGgaCG-CUCUG- -5'
28937 5' -58.9 NC_006146.1 + 20293 0.67 0.742067
Target:  5'- -aGAUCGCcaagaUCGCCCacaucCCCUGC-AGGCg -3'
miRNA:   3'- aaCUAGCG-----AGUGGGc----GGGACGcUCUG- -5'
28937 5' -58.9 NC_006146.1 + 157876 0.67 0.742067
Target:  5'- -gGAUCGCUCAgacUCUGCCa-GCaGAGACc -3'
miRNA:   3'- aaCUAGCGAGU---GGGCGGgaCG-CUCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.