miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28939 3' -48.3 NC_006146.1 + 124162 0.66 0.999291
Target:  5'- --gCCCCAAUGUAGUAGaagAGCu-- -3'
miRNA:   3'- cugGGGGUUAUAUCAUCcuaUCGuau -5'
28939 3' -48.3 NC_006146.1 + 8053 0.66 0.998922
Target:  5'- uGCUaUCCAAUAU--UAGGAUAGCAUAu -3'
miRNA:   3'- cUGG-GGGUUAUAucAUCCUAUCGUAU- -5'
28939 3' -48.3 NC_006146.1 + 23962 0.66 0.998683
Target:  5'- -cCCCCCGGgucgGGUGGGggAGCcgGa -3'
miRNA:   3'- cuGGGGGUUaua-UCAUCCuaUCGuaU- -5'
28939 3' -48.3 NC_006146.1 + 20192 0.67 0.9984
Target:  5'- gGGCCCCCGGg--GGcgcAGGAggcugGGCAUGu -3'
miRNA:   3'- -CUGGGGGUUauaUCa--UCCUa----UCGUAU- -5'
28939 3' -48.3 NC_006146.1 + 30132 0.67 0.9984
Target:  5'- cGCCCCCAugcaggggGGUGGGcAUGGCc-- -3'
miRNA:   3'- cUGGGGGUuaua----UCAUCC-UAUCGuau -5'
28939 3' -48.3 NC_006146.1 + 33164 0.67 0.998306
Target:  5'- gGACCCCCAGgagcuccagaaccgGGUAGGcccgGGCAc- -3'
miRNA:   3'- -CUGGGGGUUaua-----------UCAUCCua--UCGUau -5'
28939 3' -48.3 NC_006146.1 + 56346 0.67 0.998068
Target:  5'- aGGCCgCCCGGagcagGUAGUAGGcgugGUGGCGg- -3'
miRNA:   3'- -CUGG-GGGUUa----UAUCAUCC----UAUCGUau -5'
28939 3' -48.3 NC_006146.1 + 126912 0.67 0.998068
Target:  5'- aAUCCCaaaAAUAUG--AGGAUAGCAUAu -3'
miRNA:   3'- cUGGGGg--UUAUAUcaUCCUAUCGUAU- -5'
28939 3' -48.3 NC_006146.1 + 55150 0.67 0.997229
Target:  5'- gGACCCCCAAUGUcagccgccgggAGgccAGGGUGGaCGc- -3'
miRNA:   3'- -CUGGGGGUUAUA-----------UCa--UCCUAUC-GUau -5'
28939 3' -48.3 NC_006146.1 + 159419 0.67 0.997229
Target:  5'- cGGCCCCCGAguccgGGUGGcuGAUGGUcgAg -3'
miRNA:   3'- -CUGGGGGUUaua--UCAUC--CUAUCGuaU- -5'
28939 3' -48.3 NC_006146.1 + 129569 0.68 0.994635
Target:  5'- gGACCCCCug-GUGGUgaaGGGAcAGCu-- -3'
miRNA:   3'- -CUGGGGGuuaUAUCA---UCCUaUCGuau -5'
28939 3' -48.3 NC_006146.1 + 123384 0.68 0.993747
Target:  5'- cGCCCCCGAcacugccgcUGUAGUccccggccuuGGGGUAGCcgAc -3'
miRNA:   3'- cUGGGGGUU---------AUAUCA----------UCCUAUCGuaU- -5'
28939 3' -48.3 NC_006146.1 + 21946 0.68 0.992745
Target:  5'- aACCCCUAGcg-GGUAGGGaGGCAa- -3'
miRNA:   3'- cUGGGGGUUauaUCAUCCUaUCGUau -5'
28939 3' -48.3 NC_006146.1 + 7999 0.68 0.992745
Target:  5'- uACUaCCCAGcUGUAcUAGGAUAGCAUAu -3'
miRNA:   3'- cUGG-GGGUU-AUAUcAUCCUAUCGUAU- -5'
28939 3' -48.3 NC_006146.1 + 63403 0.69 0.991618
Target:  5'- cGCCCCCuuUGUAGUGGGAcugAGa--- -3'
miRNA:   3'- cUGGGGGuuAUAUCAUCCUa--UCguau -5'
28939 3' -48.3 NC_006146.1 + 76226 0.69 0.990357
Target:  5'- aACCCCCGAggugauuuuUGUGGcggAGGAUGGCc-- -3'
miRNA:   3'- cUGGGGGUU---------AUAUCa--UCCUAUCGuau -5'
28939 3' -48.3 NC_006146.1 + 75166 0.69 0.985668
Target:  5'- aGACUCCCGGguuacGUAGGuUGGCGUAg -3'
miRNA:   3'- -CUGGGGGUUauau-CAUCCuAUCGUAU- -5'
28939 3' -48.3 NC_006146.1 + 162741 0.73 0.928474
Target:  5'- gGGgUCCUAGUAUAGguuuGGAUAGCAUAc -3'
miRNA:   3'- -CUgGGGGUUAUAUCau--CCUAUCGUAU- -5'
28939 3' -48.3 NC_006146.1 + 30221 0.78 0.72523
Target:  5'- aGCCCCCAcUAUGGUAGaGAagGGCAUAa -3'
miRNA:   3'- cUGGGGGUuAUAUCAUC-CUa-UCGUAU- -5'
28939 3' -48.3 NC_006146.1 + 7489 1.08 0.017668
Target:  5'- aGACCCCCAAUAUAGUAGGAUAGCAUAu -3'
miRNA:   3'- -CUGGGGGUUAUAUCAUCCUAUCGUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.