miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28939 5' -42.7 NC_006146.1 + 136620 0.66 1
Target:  5'- --gGCGg-GGGGUGGCcgGgccGCUGCCg -3'
miRNA:   3'- caaUGUgaUCCUAUCGuaUa--UGAUGG- -5'
28939 5' -42.7 NC_006146.1 + 135783 0.66 1
Target:  5'- --gGCGg-GGGGUGGCcgGgccGCUGCCg -3'
miRNA:   3'- caaUGUgaUCCUAUCGuaUa--UGAUGG- -5'
28939 5' -42.7 NC_006146.1 + 135876 0.66 1
Target:  5'- --gGCGg-GGGGUGGCcgGgccGCUGCCg -3'
miRNA:   3'- caaUGUgaUCCUAUCGuaUa--UGAUGG- -5'
28939 5' -42.7 NC_006146.1 + 135969 0.66 1
Target:  5'- --gGCGg-GGGGUGGCcgGgccGCUGCCg -3'
miRNA:   3'- caaUGUgaUCCUAUCGuaUa--UGAUGG- -5'
28939 5' -42.7 NC_006146.1 + 136062 0.66 1
Target:  5'- --gGCGg-GGGGUGGCcgGgccGCUGCCg -3'
miRNA:   3'- caaUGUgaUCCUAUCGuaUa--UGAUGG- -5'
28939 5' -42.7 NC_006146.1 + 136155 0.66 1
Target:  5'- --gGCGg-GGGGUGGCcgGgccGCUGCCg -3'
miRNA:   3'- caaUGUgaUCCUAUCGuaUa--UGAUGG- -5'
28939 5' -42.7 NC_006146.1 + 136248 0.66 1
Target:  5'- --gGCGg-GGGGUGGCcgGgccGCUGCCg -3'
miRNA:   3'- caaUGUgaUCCUAUCGuaUa--UGAUGG- -5'
28939 5' -42.7 NC_006146.1 + 136341 0.66 1
Target:  5'- --gGCGg-GGGGUGGCcgGgccGCUGCCg -3'
miRNA:   3'- caaUGUgaUCCUAUCGuaUa--UGAUGG- -5'
28939 5' -42.7 NC_006146.1 + 136434 0.66 1
Target:  5'- --gGCGg-GGGGUGGCcgGgccGCUGCCg -3'
miRNA:   3'- caaUGUgaUCCUAUCGuaUa--UGAUGG- -5'
28939 5' -42.7 NC_006146.1 + 135691 0.66 1
Target:  5'- --gGCGg-GGGGUGGCcgGgccGCUGCCg -3'
miRNA:   3'- caaUGUgaUCCUAUCGuaUa--UGAUGG- -5'
28939 5' -42.7 NC_006146.1 + 135598 0.66 1
Target:  5'- --gGCGg-GGGGUGGCcgGgccGCUGCCg -3'
miRNA:   3'- caaUGUgaUCCUAUCGuaUa--UGAUGG- -5'
28939 5' -42.7 NC_006146.1 + 135505 0.66 1
Target:  5'- --gGCGg-GGGGUGGCcgGgccGCUGCCg -3'
miRNA:   3'- caaUGUgaUCCUAUCGuaUa--UGAUGG- -5'
28939 5' -42.7 NC_006146.1 + 136805 0.66 1
Target:  5'- --gGCGg-GGGGUGGCcgGgccGCUGCCg -3'
miRNA:   3'- caaUGUgaUCCUAUCGuaUa--UGAUGG- -5'
28939 5' -42.7 NC_006146.1 + 124777 0.66 1
Target:  5'- --aGCACggccAGGGcccgGGCAUGccUGCUGCUg -3'
miRNA:   3'- caaUGUGa---UCCUa---UCGUAU--AUGAUGG- -5'
28939 5' -42.7 NC_006146.1 + 136898 0.66 1
Target:  5'- --gGCGg-GGGGUGGCcgGgccGCUGCCg -3'
miRNA:   3'- caaUGUgaUCCUAUCGuaUa--UGAUGG- -5'
28939 5' -42.7 NC_006146.1 + 135125 0.66 1
Target:  5'- uUUGCuccgGCggGGGGUGGCcgGgccGCUGCCg -3'
miRNA:   3'- cAAUG----UGa-UCCUAUCGuaUa--UGAUGG- -5'
28939 5' -42.7 NC_006146.1 + 8115 0.66 1
Target:  5'- ----aACUuaucuGGAUAGCAUcUGCUAUCc -3'
miRNA:   3'- caaugUGAu----CCUAUCGUAuAUGAUGG- -5'
28939 5' -42.7 NC_006146.1 + 135226 0.66 1
Target:  5'- --gGCGg-GGGGUGGCcgGgccGCUGCCg -3'
miRNA:   3'- caaUGUgaUCCUAUCGuaUa--UGAUGG- -5'
28939 5' -42.7 NC_006146.1 + 135319 0.66 1
Target:  5'- --gGCGg-GGGGUGGCcgGgccGCUGCCg -3'
miRNA:   3'- caaUGUgaUCCUAUCGuaUa--UGAUGG- -5'
28939 5' -42.7 NC_006146.1 + 135412 0.66 1
Target:  5'- --gGCGg-GGGGUGGCcgGgccGCUGCCg -3'
miRNA:   3'- caaUGUgaUCCUAUCGuaUa--UGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.