miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2894 3' -55.4 NC_001493.1 + 110430 0.67 0.853793
Target:  5'- ---cGCCacacaUCGCGGCGaGCACCuCGGGu -3'
miRNA:   3'- guucUGGaa---AGUGCCGC-CGUGG-GUCC- -5'
2894 3' -55.4 NC_001493.1 + 99007 0.68 0.849023
Target:  5'- aCGAGGagcuugaucccaaaCUUUCGCucGGCGGCGCCUgauAGGu -3'
miRNA:   3'- -GUUCUg-------------GAAAGUG--CCGCCGUGGG---UCC- -5'
2894 3' -55.4 NC_001493.1 + 19773 0.68 0.843368
Target:  5'- uCAAGACggccccgguaUUUCGCGgaggguacgcucccGCGGCACCgGGGa -3'
miRNA:   3'- -GUUCUGg---------AAAGUGC--------------CGCCGUGGgUCC- -5'
2894 3' -55.4 NC_001493.1 + 17759 0.68 0.837618
Target:  5'- uCGGGGCCgcaaCGCGG-GcGUGCCCGGGa -3'
miRNA:   3'- -GUUCUGGaaa-GUGCCgC-CGUGGGUCC- -5'
2894 3' -55.4 NC_001493.1 + 94980 0.68 0.837618
Target:  5'- gGGGAUCUacgaGCGGCGGCAgauuCCguGGg -3'
miRNA:   3'- gUUCUGGAaag-UGCCGCCGU----GGguCC- -5'
2894 3' -55.4 NC_001493.1 + 114529 0.68 0.837618
Target:  5'- -cGGACagggggUUCAgaugguCcGCGGCACCCAGGg -3'
miRNA:   3'- guUCUGga----AAGU------GcCGCCGUGGGUCC- -5'
2894 3' -55.4 NC_001493.1 + 133313 0.68 0.837618
Target:  5'- uCGGGGCCgcaaCGCGG-GcGUGCCCGGGa -3'
miRNA:   3'- -GUUCUGGaaa-GUGCCgC-CGUGGGUCC- -5'
2894 3' -55.4 NC_001493.1 + 113446 0.68 0.829242
Target:  5'- -uGGACCUUgggaGGgGGUugCCGGGu -3'
miRNA:   3'- guUCUGGAAagugCCgCCGugGGUCC- -5'
2894 3' -55.4 NC_001493.1 + 89628 0.68 0.817212
Target:  5'- --uGACCgaacagucgcgCACGGCGGCGuucUCUAGGg -3'
miRNA:   3'- guuCUGGaaa--------GUGCCGCCGU---GGGUCC- -5'
2894 3' -55.4 NC_001493.1 + 94516 0.68 0.811952
Target:  5'- gCAGGGCCgUUUCugGcGCacgGGUcCCCGGGa -3'
miRNA:   3'- -GUUCUGG-AAAGugC-CG---CCGuGGGUCC- -5'
2894 3' -55.4 NC_001493.1 + 29302 0.68 0.811951
Target:  5'- -cGGGCCgaaCGCGGgGGCacgGCCCGGa -3'
miRNA:   3'- guUCUGGaaaGUGCCgCCG---UGGGUCc -5'
2894 3' -55.4 NC_001493.1 + 101166 0.68 0.803053
Target:  5'- gGAGACCcuUUUCACGGCGcuacuguCAUCgAGGg -3'
miRNA:   3'- gUUCUGG--AAAGUGCCGCc------GUGGgUCC- -5'
2894 3' -55.4 NC_001493.1 + 126153 0.68 0.803053
Target:  5'- uCGGGACCUgacCAC-GCGGCucgAUCCGGGu -3'
miRNA:   3'- -GUUCUGGAaa-GUGcCGCCG---UGGGUCC- -5'
2894 3' -55.4 NC_001493.1 + 10599 0.68 0.803053
Target:  5'- uCGGGACCUgacCAC-GCGGCucgAUCCGGGu -3'
miRNA:   3'- -GUUCUGGAaa-GUGcCGCCG---UGGGUCC- -5'
2894 3' -55.4 NC_001493.1 + 27969 0.69 0.784793
Target:  5'- --cGAUCggggCACGcGCGGCACCCGa- -3'
miRNA:   3'- guuCUGGaaa-GUGC-CGCCGUGGGUcc -5'
2894 3' -55.4 NC_001493.1 + 123971 0.69 0.784793
Target:  5'- -cGGACCUUcgGCuGCGGCuguggACCCGGGc -3'
miRNA:   3'- guUCUGGAAagUGcCGCCG-----UGGGUCC- -5'
2894 3' -55.4 NC_001493.1 + 8417 0.69 0.784793
Target:  5'- -cGGACCUUcgGCuGCGGCuguggACCCGGGc -3'
miRNA:   3'- guUCUGGAAagUGcCGCCG-----UGGGUCC- -5'
2894 3' -55.4 NC_001493.1 + 90569 0.69 0.775448
Target:  5'- gCGAGACCg-UCACGaCGGCGCUagAGGa -3'
miRNA:   3'- -GUUCUGGaaAGUGCcGCCGUGGg-UCC- -5'
2894 3' -55.4 NC_001493.1 + 44490 0.69 0.765974
Target:  5'- gGAGACCgugcUCGCGGaCGaGCGguUCCGGGg -3'
miRNA:   3'- gUUCUGGaa--AGUGCC-GC-CGU--GGGUCC- -5'
2894 3' -55.4 NC_001493.1 + 100302 0.69 0.765974
Target:  5'- -uGGAUUggagCACgGGCGGC-CCCGGGg -3'
miRNA:   3'- guUCUGGaaa-GUG-CCGCCGuGGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.