Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2894 | 5' | -62.5 | NC_001493.1 | + | 133754 | 1.06 | 0.00098 |
Target: 5'- cCGCCCGGGCGUGCCCAUGGAGGUGUAc -3' miRNA: 3'- -GCGGGCCCGCACGGGUACCUCCACAU- -5' |
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2894 | 5' | -62.5 | NC_001493.1 | + | 133610 | 0.66 | 0.543255 |
Target: 5'- aCGCCCGGGCG-GUCgGgGGccuGGGUGc- -3' miRNA: 3'- -GCGGGCCCGCaCGGgUaCC---UCCACau -5' |
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2894 | 5' | -62.5 | NC_001493.1 | + | 133307 | 0.68 | 0.450006 |
Target: 5'- cCGCaacgCGGGCGUGCCCG-GGAucGUGUu -3' miRNA: 3'- -GCGg---GCCCGCACGGGUaCCUc-CACAu -5' |
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2894 | 5' | -62.5 | NC_001493.1 | + | 132103 | 0.71 | 0.293884 |
Target: 5'- uGCCCcaGGGCGagagGCCCGUGGAcggucucaGGUGa- -3' miRNA: 3'- gCGGG--CCCGCa---CGGGUACCU--------CCACau -5' |
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2894 | 5' | -62.5 | NC_001493.1 | + | 111179 | 0.68 | 0.467991 |
Target: 5'- uCGCCgGGGUGUGCCgUGUGG-GGUc-- -3' miRNA: 3'- -GCGGgCCCGCACGG-GUACCuCCAcau -5' |
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2894 | 5' | -62.5 | NC_001493.1 | + | 106157 | 0.75 | 0.178917 |
Target: 5'- gGUggGGGCagGUGCCCAUGGAGGUGa- -3' miRNA: 3'- gCGggCCCG--CACGGGUACCUCCACau -5' |
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2894 | 5' | -62.5 | NC_001493.1 | + | 94680 | 0.67 | 0.50502 |
Target: 5'- --aCCGGGuCGUGCCCGaccGGGGGUa-- -3' miRNA: 3'- gcgGGCCC-GCACGGGUa--CCUCCAcau -5' |
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2894 | 5' | -62.5 | NC_001493.1 | + | 88328 | 0.67 | 0.486338 |
Target: 5'- -cCCCGGGCGUcCCCAaGGuGGaUGUGu -3' miRNA: 3'- gcGGGCCCGCAcGGGUaCCuCC-ACAU- -5' |
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2894 | 5' | -62.5 | NC_001493.1 | + | 62447 | 0.66 | 0.592275 |
Target: 5'- uGCCCGuGGcCGUGCCCGUGcccGUGc- -3' miRNA: 3'- gCGGGC-CC-GCACGGGUACcucCACau -5' |
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2894 | 5' | -62.5 | NC_001493.1 | + | 62405 | 0.7 | 0.366256 |
Target: 5'- cCGCCCGGuGgaccucgcccccCGUGCCCGUGGccGUGg- -3' miRNA: 3'- -GCGGGCC-C------------GCACGGGUACCucCACau -5' |
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2894 | 5' | -62.5 | NC_001493.1 | + | 60300 | 0.66 | 0.592275 |
Target: 5'- gCGCCCGcGGUau-UCCGcGGAGGUGUGa -3' miRNA: 3'- -GCGGGC-CCGcacGGGUaCCUCCACAU- -5' |
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2894 | 5' | -62.5 | NC_001493.1 | + | 41939 | 0.68 | 0.450006 |
Target: 5'- cCGagCCGGGCGaGUCCAcggcgccgcacuUGGAGGUGg- -3' miRNA: 3'- -GCg-GGCCCGCaCGGGU------------ACCUCCACau -5' |
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2894 | 5' | -62.5 | NC_001493.1 | + | 21046 | 0.73 | 0.227707 |
Target: 5'- gGCaCCGGGgaucCCCAUGGAGGUGUAc -3' miRNA: 3'- gCG-GGCCCgcacGGGUACCUCCACAU- -5' |
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2894 | 5' | -62.5 | NC_001493.1 | + | 18200 | 1.06 | 0.00098 |
Target: 5'- cCGCCCGGGCGUGCCCAUGGAGGUGUAc -3' miRNA: 3'- -GCGGGCCCGCACGGGUACCUCCACAU- -5' |
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2894 | 5' | -62.5 | NC_001493.1 | + | 18055 | 0.66 | 0.543255 |
Target: 5'- aCGCCCGGGCG-GUCgGgGGccuGGGUGc- -3' miRNA: 3'- -GCGGGCCCGCaCGGgUaCC---UCCACau -5' |
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2894 | 5' | -62.5 | NC_001493.1 | + | 17753 | 0.68 | 0.450006 |
Target: 5'- cCGCaacgCGGGCGUGCCCG-GGAucGUGUu -3' miRNA: 3'- -GCGg---GCCCGCACGGGUaCCUc-CACAu -5' |
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2894 | 5' | -62.5 | NC_001493.1 | + | 16549 | 0.71 | 0.293884 |
Target: 5'- uGCCCcaGGGCGagagGCCCGUGGAcggucucaGGUGa- -3' miRNA: 3'- gCGGG--CCCGCa---CGGGUACCU--------CCACau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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