miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28940 3' -44.6 NC_006146.1 + 89459 0.67 0.999995
Target:  5'- uGAAGCUGGuGGUuGUuUGCcACUACCa -3'
miRNA:   3'- gUUUCGAUC-CUAuCAuAUG-UGAUGGg -5'
28940 3' -44.6 NC_006146.1 + 42544 0.67 0.999995
Target:  5'- gGAAGCagacggGGGGUGGggggGCGCUgaauucuuucaaGCCCa -3'
miRNA:   3'- gUUUCGa-----UCCUAUCaua-UGUGA------------UGGG- -5'
28940 3' -44.6 NC_006146.1 + 8095 0.67 0.999992
Target:  5'- -------uGGAUAGcAUAUGCUACCCg -3'
miRNA:   3'- guuucgauCCUAUCaUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 12739 0.67 0.999992
Target:  5'- gGAGGCcaaGGUGGUGcACGCUgaGCCCa -3'
miRNA:   3'- gUUUCGaucCUAUCAUaUGUGA--UGGG- -5'
28940 3' -44.6 NC_006146.1 + 132463 0.67 0.999992
Target:  5'- gGAGGCagGGGAU-GUGUGCcaGCagagGCCCg -3'
miRNA:   3'- gUUUCGa-UCCUAuCAUAUG--UGa---UGGG- -5'
28940 3' -44.6 NC_006146.1 + 39531 0.67 0.999992
Target:  5'- -uGGGCUGGGggAGgcgGCGCaagggcuggaUACCCg -3'
miRNA:   3'- guUUCGAUCCuaUCauaUGUG----------AUGGG- -5'
28940 3' -44.6 NC_006146.1 + 6629 0.67 0.999992
Target:  5'- -uGAGCUAGuGAacacccgGGaccUACGCUGCCCu -3'
miRNA:   3'- guUUCGAUC-CUa------UCau-AUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 34264 0.67 0.999989
Target:  5'- --cGGCUGGGGgu-UGUGCACccCCCg -3'
miRNA:   3'- guuUCGAUCCUaucAUAUGUGauGGG- -5'
28940 3' -44.6 NC_006146.1 + 138094 0.67 0.999989
Target:  5'- --cGGCUGGGGgu-UGUGCACccCCCg -3'
miRNA:   3'- guuUCGAUCCUaucAUAUGUGauGGG- -5'
28940 3' -44.6 NC_006146.1 + 85441 0.68 0.999984
Target:  5'- gAAGGCccugAGGGaaaUGGUG-ACACUugCCa -3'
miRNA:   3'- gUUUCGa---UCCU---AUCAUaUGUGAugGG- -5'
28940 3' -44.6 NC_006146.1 + 163123 0.68 0.999984
Target:  5'- --uAGCUuucGGUAGcAUAUGCUACCCu -3'
miRNA:   3'- guuUCGAuc-CUAUCaUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 169662 0.68 0.999978
Target:  5'- --cAGCUGGGcGUGGcggGCGCgcgugGCCCg -3'
miRNA:   3'- guuUCGAUCC-UAUCauaUGUGa----UGGG- -5'
28940 3' -44.6 NC_006146.1 + 168730 0.68 0.999978
Target:  5'- --cAGCUGGGcGUGGcggGCGCgcgugGCCCg -3'
miRNA:   3'- guuUCGAUCC-UAUCauaUGUGa----UGGG- -5'
28940 3' -44.6 NC_006146.1 + 167798 0.68 0.999978
Target:  5'- --cAGCUGGGcGUGGcggGCGCgcgugGCCCg -3'
miRNA:   3'- guuUCGAUCC-UAUCauaUGUGa----UGGG- -5'
28940 3' -44.6 NC_006146.1 + 161154 0.68 0.999978
Target:  5'- gGAAGUacugcccgGGuGAUAGcAUAUACUACCCc -3'
miRNA:   3'- gUUUCGa-------UC-CUAUCaUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 7985 0.68 0.99997
Target:  5'- ----uUUAGGAcAGcAUAUACUACCCa -3'
miRNA:   3'- guuucGAUCCUaUCaUAUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 136998 0.68 0.999959
Target:  5'- aGGAGCUccaggacgGGGGUAGgccggGCAC-ACCCc -3'
miRNA:   3'- gUUUCGA--------UCCUAUCaua--UGUGaUGGG- -5'
28940 3' -44.6 NC_006146.1 + 9655 0.68 0.999959
Target:  5'- ---cGUUGGGAcGGgcccuUAUACUGCCCc -3'
miRNA:   3'- guuuCGAUCCUaUCau---AUGUGAUGGG- -5'
28940 3' -44.6 NC_006146.1 + 67251 0.68 0.999959
Target:  5'- gGAGGCUGGGGgg--AUAgGCggGCCCc -3'
miRNA:   3'- gUUUCGAUCCUaucaUAUgUGa-UGGG- -5'
28940 3' -44.6 NC_006146.1 + 137185 0.68 0.999959
Target:  5'- aGGAGCUccagaacgGGGGUAGgccggGCAC-ACCCc -3'
miRNA:   3'- gUUUCGA--------UCCUAUCaua--UGUGaUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.