miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28940 5' -49 NC_006146.1 + 7964 0.73 0.881295
Target:  5'- --aGAUAGCAUAUGCUAuCCCAAUUu- -3'
miRNA:   3'- accCUAUCGUAUACGAU-GGGUUGAuu -5'
28940 5' -49 NC_006146.1 + 116954 0.77 0.691196
Target:  5'- uUGGuGAUGGCAU-UGUUGCCCAugUGAc -3'
miRNA:   3'- -ACC-CUAUCGUAuACGAUGGGUugAUU- -5'
28940 5' -49 NC_006146.1 + 7564 0.77 0.712671
Target:  5'- -aGGAUAaCAUAUGCUACCCAaaGCUAGg -3'
miRNA:   3'- acCCUAUcGUAUACGAUGGGU--UGAUU- -5'
28940 5' -49 NC_006146.1 + 7751 0.76 0.774852
Target:  5'- -aGGAUAGUAUAcaCUACCCAACUAAa -3'
miRNA:   3'- acCCUAUCGUAUacGAUGGGUUGAUU- -5'
28940 5' -49 NC_006146.1 + 7698 0.75 0.79453
Target:  5'- -nGGAUAGUAUAcaCUACCCAACUAAa -3'
miRNA:   3'- acCCUAUCGUAUacGAUGGGUUGAUU- -5'
28940 5' -49 NC_006146.1 + 7804 0.75 0.79453
Target:  5'- -nGGAUAGUAUAcaCUACCCAACUAAa -3'
miRNA:   3'- acCCUAUCGUAUacGAUGGGUUGAUU- -5'
28940 5' -49 NC_006146.1 + 70510 0.75 0.813537
Target:  5'- gGGGAUggcugaaaugAGCGUGgaggacaugGCUGCCCGGCUGg -3'
miRNA:   3'- aCCCUA----------UCGUAUa--------CGAUGGGUUGAUu -5'
28940 5' -49 NC_006146.1 + 7885 0.75 0.822763
Target:  5'- -aGGAUAGCAUAUGCUACgCAaaGCUn- -3'
miRNA:   3'- acCCUAUCGUAUACGAUGgGU--UGAuu -5'
28940 5' -49 NC_006146.1 + 7988 0.74 0.865736
Target:  5'- -aGGAcAGCAUAUaCUACCCAGCUGu -3'
miRNA:   3'- acCCUaUCGUAUAcGAUGGGUUGAUu -5'
28940 5' -49 NC_006146.1 + 9737 0.77 0.680369
Target:  5'- cUGGGGUAGUAUAUGCUaucACCCGGg--- -3'
miRNA:   3'- -ACCCUAUCGUAUACGA---UGGGUUgauu -5'
28940 5' -49 NC_006146.1 + 7779 0.81 0.486997
Target:  5'- -aGGGUAGCAUAUGCUACCgaaAGCUAGg -3'
miRNA:   3'- acCCUAUCGUAUACGAUGGg--UUGAUU- -5'
28940 5' -49 NC_006146.1 + 8016 0.82 0.46682
Target:  5'- -aGGAUAGCAUAUGCUACCCcaauAUUAAg -3'
miRNA:   3'- acCCUAUCGUAUACGAUGGGu---UGAUU- -5'
28940 5' -49 NC_006146.1 + 7645 0.98 0.05647
Target:  5'- -aGGAUAGCAUAUGCUACCCAACUAAa -3'
miRNA:   3'- acCCUAUCGUAUACGAUGGGUUGAUU- -5'
28940 5' -49 NC_006146.1 + 8067 0.91 0.139878
Target:  5'- -aGGAUAGCAUAUGCUACCUAACUAu -3'
miRNA:   3'- acCCUAUCGUAUACGAUGGGUUGAUu -5'
28940 5' -49 NC_006146.1 + 7832 0.89 0.18865
Target:  5'- -aGGAUAGCAUAUGCUACCCAcaGCUAu -3'
miRNA:   3'- acCCUAUCGUAUACGAUGGGU--UGAUu -5'
28940 5' -49 NC_006146.1 + 7910 0.85 0.307904
Target:  5'- -aGGAUAGCAUAUGCUACCCAGauCUAu -3'
miRNA:   3'- acCCUAUCGUAUACGAUGGGUU--GAUu -5'
28940 5' -49 NC_006146.1 + 8095 0.84 0.347597
Target:  5'- -uGGAUAGCAUAUGCUACCCgAACUu- -3'
miRNA:   3'- acCCUAUCGUAUACGAUGGG-UUGAuu -5'
28940 5' -49 NC_006146.1 + 43955 0.84 0.355961
Target:  5'- cGGGAUAGUGUAUGCUACCUGAUg-- -3'
miRNA:   3'- aCCCUAUCGUAUACGAUGGGUUGauu -5'
28940 5' -49 NC_006146.1 + 7673 0.82 0.42782
Target:  5'- -aGGAUAGCAUAUGCUACCgaaAGCUAGg -3'
miRNA:   3'- acCCUAUCGUAUACGAUGGg--UUGAUU- -5'
28940 5' -49 NC_006146.1 + 7938 0.82 0.46682
Target:  5'- -aGGAUAGUAUAUGCUACCCG-CUAu -3'
miRNA:   3'- acCCUAUCGUAUACGAUGGGUuGAUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.