miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28940 5' -49 NC_006146.1 + 135509 0.66 0.997904
Target:  5'- gGGGGUGGCcgggccgcugccggGUccGCUGCCCGGucCUGGa -3'
miRNA:   3'- aCCCUAUCG--------------UAuaCGAUGGGUU--GAUU- -5'
28940 5' -49 NC_006146.1 + 136159 0.66 0.997904
Target:  5'- gGGGGUGGCcgggccgcugccggGUccGCUGCCCGGucCUGGa -3'
miRNA:   3'- aCCCUAUCG--------------UAuaCGAUGGGUU--GAUU- -5'
28940 5' -49 NC_006146.1 + 136252 0.66 0.997904
Target:  5'- gGGGGUGGCcgggccgcugccggGUccGCUGCCCGGucCUGGa -3'
miRNA:   3'- aCCCUAUCG--------------UAuaCGAUGGGUU--GAUU- -5'
28940 5' -49 NC_006146.1 + 136345 0.66 0.997904
Target:  5'- gGGGGUGGCcgggccgcugccggGUccGCUGCCCGGucCUGGa -3'
miRNA:   3'- aCCCUAUCG--------------UAuaCGAUGGGUU--GAUU- -5'
28940 5' -49 NC_006146.1 + 136438 0.66 0.997904
Target:  5'- gGGGGUGGCcgggccgcugccggGUccGCUGCCCGGucCUGGa -3'
miRNA:   3'- aCCCUAUCG--------------UAuaCGAUGGGUU--GAUU- -5'
28940 5' -49 NC_006146.1 + 136531 0.66 0.997904
Target:  5'- gGGGGUGGCcgggccgcugccggGUccGCUGCCCGGucCUGGa -3'
miRNA:   3'- aCCCUAUCG--------------UAuaCGAUGGGUU--GAUU- -5'
28940 5' -49 NC_006146.1 + 136624 0.66 0.997904
Target:  5'- gGGGGUGGCcgggccgcugccggGUccGCUGCCCGGucCUGGa -3'
miRNA:   3'- aCCCUAUCG--------------UAuaCGAUGGGUU--GAUU- -5'
28940 5' -49 NC_006146.1 + 142392 0.66 0.99762
Target:  5'- cGGGuuUAGCAguUGCgcuCCCGACUu- -3'
miRNA:   3'- aCCCu-AUCGUauACGau-GGGUUGAuu -5'
28940 5' -49 NC_006146.1 + 122770 0.66 0.99762
Target:  5'- gGGGAUcuGGCGgg-GCUcCCCGGCg-- -3'
miRNA:   3'- aCCCUA--UCGUauaCGAuGGGUUGauu -5'
28940 5' -49 NC_006146.1 + 137996 0.66 0.99762
Target:  5'- cGGGGUGGgGgGUGCgccCCCAGCc-- -3'
miRNA:   3'- aCCCUAUCgUaUACGau-GGGUUGauu -5'
28940 5' -49 NC_006146.1 + 136717 0.66 0.997576
Target:  5'- gGGGGUGGCcggccgcugccggGUccGCUGCCCGGucCUGGa -3'
miRNA:   3'- aCCCUAUCG-------------UAuaCGAUGGGUU--GAUU- -5'
28940 5' -49 NC_006146.1 + 37122 0.66 0.997158
Target:  5'- gGGGAUGGUggGUaGCUGCCuCGAgUGu -3'
miRNA:   3'- aCCCUAUCGuaUA-CGAUGG-GUUgAUu -5'
28940 5' -49 NC_006146.1 + 135695 0.66 0.997006
Target:  5'- gGGGGUGGCcgggccgcugccggGUccGCUGCCCGucCUGGa -3'
miRNA:   3'- aCCCUAUCG--------------UAuaCGAUGGGUu-GAUU- -5'
28940 5' -49 NC_006146.1 + 7589 0.67 0.996012
Target:  5'- -nGGAUAGUAUAcaCUACCCAcCUAAa -3'
miRNA:   3'- acCCUAUCGUAUacGAUGGGUuGAUU- -5'
28940 5' -49 NC_006146.1 + 95661 0.67 0.99531
Target:  5'- aUGGGAUcuGGCAUAUGUgUAgCCGggGCUAc -3'
miRNA:   3'- -ACCCUA--UCGUAUACG-AUgGGU--UGAUu -5'
28940 5' -49 NC_006146.1 + 17801 0.67 0.99531
Target:  5'- cGGGcuccgagAGCAUGUGCUACUCGc---- -3'
miRNA:   3'- aCCCua-----UCGUAUACGAUGGGUugauu -5'
28940 5' -49 NC_006146.1 + 163236 0.67 0.992585
Target:  5'- --cGGUAGCAUAUGCUAuCCUAAUUu- -3'
miRNA:   3'- accCUAUCGUAUACGAU-GGGUUGAuu -5'
28940 5' -49 NC_006146.1 + 162759 0.68 0.991438
Target:  5'- -uGGAUAGCAUAcGCUACC-AACa-- -3'
miRNA:   3'- acCCUAUCGUAUaCGAUGGgUUGauu -5'
28940 5' -49 NC_006146.1 + 114221 0.68 0.990156
Target:  5'- gGGGGUAGCAgcccgGCgAUCCGGCg-- -3'
miRNA:   3'- aCCCUAUCGUaua--CGaUGGGUUGauu -5'
28940 5' -49 NC_006146.1 + 161616 0.68 0.988727
Target:  5'- cGGc--AGUAUGUGCUAUCCAACa-- -3'
miRNA:   3'- aCCcuaUCGUAUACGAUGGGUUGauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.