miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28941 3' -46.9 NC_006146.1 + 118778 0.66 0.999919
Target:  5'- uCGAACgua-CUGGAUGGCGUUggUGUa- -3'
miRNA:   3'- -GCUUGaauaGACCUAUCGUAG--ACGau -5'
28941 3' -46.9 NC_006146.1 + 114453 0.66 0.999893
Target:  5'- uCGGACUUggagAUCUGGcccAGCAggUGCUGg -3'
miRNA:   3'- -GCUUGAA----UAGACCua-UCGUagACGAU- -5'
28941 3' -46.9 NC_006146.1 + 69971 0.66 0.99986
Target:  5'- gGAGCUUGucauUCUGGAaggcgUAGCGUaUGCg- -3'
miRNA:   3'- gCUUGAAU----AGACCU-----AUCGUAgACGau -5'
28941 3' -46.9 NC_006146.1 + 71550 0.66 0.999819
Target:  5'- gGAGCU--UCUGGuGUAGUcUCUGUUAu -3'
miRNA:   3'- gCUUGAauAGACC-UAUCGuAGACGAU- -5'
28941 3' -46.9 NC_006146.1 + 27666 0.66 0.999766
Target:  5'- gGGGuCUaGUCUGGGUGGgAUCagGCUAa -3'
miRNA:   3'- gCUU-GAaUAGACCUAUCgUAGa-CGAU- -5'
28941 3' -46.9 NC_006146.1 + 24588 0.66 0.999766
Target:  5'- gGGGuCUaGUCUGGGUGGgAUCagGCUAa -3'
miRNA:   3'- gCUU-GAaUAGACCUAUCgUAGa-CGAU- -5'
28941 3' -46.9 NC_006146.1 + 21510 0.66 0.999766
Target:  5'- gGGGuCUaGUCUGGGUGGgAUCagGCUAa -3'
miRNA:   3'- gCUU-GAaUAGACCUAUCgUAGa-CGAU- -5'
28941 3' -46.9 NC_006146.1 + 18432 0.66 0.999766
Target:  5'- gGGGuCUaGUCUGGGUGGgAUCagGCUAa -3'
miRNA:   3'- gCUU-GAaUAGACCUAUCgUAGa-CGAU- -5'
28941 3' -46.9 NC_006146.1 + 15354 0.66 0.999766
Target:  5'- gGGGuCUaGUCUGGGUGGgAUCagGCUAa -3'
miRNA:   3'- gCUU-GAaUAGACCUAUCgUAGa-CGAU- -5'
28941 3' -46.9 NC_006146.1 + 12275 0.66 0.999766
Target:  5'- gGGGuCUaGUCUGGGUGGgAUCagGCUAa -3'
miRNA:   3'- gCUU-GAaUAGACCUAUCgUAGa-CGAU- -5'
28941 3' -46.9 NC_006146.1 + 162989 0.69 0.995903
Target:  5'- -uAAUagAUCUGGGUAGCAUaUGCUAu -3'
miRNA:   3'- gcUUGaaUAGACCUAUCGUAgACGAU- -5'
28941 3' -46.9 NC_006146.1 + 152437 0.71 0.991199
Target:  5'- gCGAGCUcGUCgauccccGGGUagAGCAUCUGCa- -3'
miRNA:   3'- -GCUUGAaUAGa------CCUA--UCGUAGACGau -5'
28941 3' -46.9 NC_006146.1 + 8085 0.76 0.870762
Target:  5'- -uAACUaUAUCUGGAUAGCAUaUGCUAc -3'
miRNA:   3'- gcUUGA-AUAGACCUAUCGUAgACGAU- -5'
28941 3' -46.9 NC_006146.1 + 8112 1.08 0.023322
Target:  5'- cCGAACUUAUCUGGAUAGCAUCUGCUAu -3'
miRNA:   3'- -GCUUGAAUAGACCUAUCGUAGACGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.