miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28941 5' -45.8 NC_006146.1 + 7780 0.67 0.999963
Target:  5'- gGGUAGCaUAUGCUA-CCGAAagCUAg- -3'
miRNA:   3'- -CCAUCGcAUACGAUaGGUUUg-GAUau -5'
28941 5' -45.8 NC_006146.1 + 162430 0.67 0.999963
Target:  5'- aGGUAGCGggagagaaaGCUAUCCA--UCUGUu -3'
miRNA:   3'- -CCAUCGCaua------CGAUAGGUuuGGAUAu -5'
28941 5' -45.8 NC_006146.1 + 161751 0.67 0.999881
Target:  5'- gGGUGGCGgcUGagGUCCGAgggggcGCCUGg- -3'
miRNA:   3'- -CCAUCGCauACgaUAGGUU------UGGAUau -5'
28941 5' -45.8 NC_006146.1 + 163211 0.68 0.99967
Target:  5'- gGGUAGUGUAUaCUAUCCuAGCUUu-- -3'
miRNA:   3'- -CCAUCGCAUAcGAUAGGuUUGGAuau -5'
28941 5' -45.8 NC_006146.1 + 163158 0.68 0.99967
Target:  5'- gGGUAGUGUAUaCUAUCCuAGCUUu-- -3'
miRNA:   3'- -CCAUCGCAUAcGAUAGGuUUGGAuau -5'
28941 5' -45.8 NC_006146.1 + 163105 0.68 0.99967
Target:  5'- gGGUAGUGUAUaCUAUCCuAGCUUu-- -3'
miRNA:   3'- -CCAUCGCAUAcGAUAGGuUUGGAuau -5'
28941 5' -45.8 NC_006146.1 + 163320 0.68 0.99967
Target:  5'- gGGUAGUGUAUaCUAUCCuAGCUUu-- -3'
miRNA:   3'- -CCAUCGCAUAcGAUAGGuUUGGAuau -5'
28941 5' -45.8 NC_006146.1 + 83638 0.69 0.999341
Target:  5'- uGGUGGCGggggcucUGCgggCCAGACCUc-- -3'
miRNA:   3'- -CCAUCGCau-----ACGauaGGUUUGGAuau -5'
28941 5' -45.8 NC_006146.1 + 162841 0.69 0.999341
Target:  5'- aGGUAGCaUAUGCUAUCCuAAUa---- -3'
miRNA:   3'- -CCAUCGcAUACGAUAGGuUUGgauau -5'
28941 5' -45.8 NC_006146.1 + 163025 0.69 0.999341
Target:  5'- cGUAGCaUAUGCUAUCCuAAUUUAg- -3'
miRNA:   3'- cCAUCGcAUACGAUAGGuUUGGAUau -5'
28941 5' -45.8 NC_006146.1 + 8095 0.7 0.998762
Target:  5'- uGGaUAGCaUAUGCUAcCCGAACUUAUc -3'
miRNA:   3'- -CC-AUCGcAUACGAUaGGUUUGGAUAu -5'
28941 5' -45.8 NC_006146.1 + 88270 0.7 0.998172
Target:  5'- --cGGCGUGUGCUGggUCGGGCCUc-- -3'
miRNA:   3'- ccaUCGCAUACGAUa-GGUUUGGAuau -5'
28941 5' -45.8 NC_006146.1 + 162892 0.7 0.997797
Target:  5'- gGGUAGCaUAUGCUAUCCuaguacAGCUggGUAg -3'
miRNA:   3'- -CCAUCGcAUACGAUAGGu-----UUGGa-UAU- -5'
28941 5' -45.8 NC_006146.1 + 7910 0.71 0.995598
Target:  5'- aGGaUAGCaUAUGCUAcCCAGAUCUAUu -3'
miRNA:   3'- -CC-AUCGcAUACGAUaGGUUUGGAUAu -5'
28941 5' -45.8 NC_006146.1 + 163373 0.73 0.985982
Target:  5'- gGGUAGUaUAUGCUAUCCuaguguAACCUu-- -3'
miRNA:   3'- -CCAUCGcAUACGAUAGGu-----UUGGAuau -5'
28941 5' -45.8 NC_006146.1 + 163077 0.74 0.977282
Target:  5'- gGGUAGCaUAUGCUAUCCuAAUUUAg- -3'
miRNA:   3'- -CCAUCGcAUACGAUAGGuUUGGAUau -5'
28941 5' -45.8 NC_006146.1 + 163292 0.74 0.977282
Target:  5'- gGGUAGCaUAUGCUAUCCcAAUUUAg- -3'
miRNA:   3'- -CCAUCGcAUACGAUAGGuUUGGAUau -5'
28941 5' -45.8 NC_006146.1 + 163264 0.74 0.977282
Target:  5'- gGGUAGCaUAUGCUAUCCuAAUUUAg- -3'
miRNA:   3'- -CCAUCGcAUACGAUAGGuUUGGAUau -5'
28941 5' -45.8 NC_006146.1 + 163236 0.74 0.968528
Target:  5'- cGGUAGCaUAUGCUAUCCuAAUUUAg- -3'
miRNA:   3'- -CCAUCGcAUACGAUAGGuUUGGAUau -5'
28941 5' -45.8 NC_006146.1 + 162999 0.74 0.968528
Target:  5'- gGGUAGCaUAUGCUAUCCuAGCUUu-- -3'
miRNA:   3'- -CCAUCGcAUACGAUAGGuUUGGAuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.