Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28941 | 5' | -45.8 | NC_006146.1 | + | 7780 | 0.67 | 0.999963 |
Target: 5'- gGGUAGCaUAUGCUA-CCGAAagCUAg- -3' miRNA: 3'- -CCAUCGcAUACGAUaGGUUUg-GAUau -5' |
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28941 | 5' | -45.8 | NC_006146.1 | + | 7910 | 0.71 | 0.995598 |
Target: 5'- aGGaUAGCaUAUGCUAcCCAGAUCUAUu -3' miRNA: 3'- -CC-AUCGcAUACGAUaGGUUUGGAUAu -5' |
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28941 | 5' | -45.8 | NC_006146.1 | + | 8095 | 0.7 | 0.998762 |
Target: 5'- uGGaUAGCaUAUGCUAcCCGAACUUAUc -3' miRNA: 3'- -CC-AUCGcAUACGAUaGGUUUGGAUAu -5' |
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28941 | 5' | -45.8 | NC_006146.1 | + | 8149 | 1.1 | 0.024852 |
Target: 5'- uGGUAGCGUAUGCUAUCCAAACCUAUAc -3' miRNA: 3'- -CCAUCGCAUACGAUAGGUUUGGAUAU- -5' |
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28941 | 5' | -45.8 | NC_006146.1 | + | 83638 | 0.69 | 0.999341 |
Target: 5'- uGGUGGCGggggcucUGCgggCCAGACCUc-- -3' miRNA: 3'- -CCAUCGCau-----ACGauaGGUUUGGAuau -5' |
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28941 | 5' | -45.8 | NC_006146.1 | + | 88270 | 0.7 | 0.998172 |
Target: 5'- --cGGCGUGUGCUGggUCGGGCCUc-- -3' miRNA: 3'- ccaUCGCAUACGAUa-GGUUUGGAuau -5' |
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28941 | 5' | -45.8 | NC_006146.1 | + | 161751 | 0.67 | 0.999881 |
Target: 5'- gGGUGGCGgcUGagGUCCGAgggggcGCCUGg- -3' miRNA: 3'- -CCAUCGCauACgaUAGGUU------UGGAUau -5' |
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28941 | 5' | -45.8 | NC_006146.1 | + | 162430 | 0.67 | 0.999963 |
Target: 5'- aGGUAGCGggagagaaaGCUAUCCA--UCUGUu -3' miRNA: 3'- -CCAUCGCaua------CGAUAGGUuuGGAUAu -5' |
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28941 | 5' | -45.8 | NC_006146.1 | + | 162813 | 0.78 | 0.889717 |
Target: 5'- gGGUAGCaUAUGCUAUCCAGAUa---- -3' miRNA: 3'- -CCAUCGcAUACGAUAGGUUUGgauau -5' |
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28941 | 5' | -45.8 | NC_006146.1 | + | 162841 | 0.69 | 0.999341 |
Target: 5'- aGGUAGCaUAUGCUAUCCuAAUa---- -3' miRNA: 3'- -CCAUCGcAUACGAUAGGuUUGgauau -5' |
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28941 | 5' | -45.8 | NC_006146.1 | + | 162892 | 0.7 | 0.997797 |
Target: 5'- gGGUAGCaUAUGCUAUCCuaguacAGCUggGUAg -3' miRNA: 3'- -CCAUCGcAUACGAUAGGu-----UUGGa-UAU- -5' |
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28941 | 5' | -45.8 | NC_006146.1 | + | 162999 | 0.74 | 0.968528 |
Target: 5'- gGGUAGCaUAUGCUAUCCuAGCUUu-- -3' miRNA: 3'- -CCAUCGcAUACGAUAGGuUUGGAuau -5' |
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28941 | 5' | -45.8 | NC_006146.1 | + | 163025 | 0.69 | 0.999341 |
Target: 5'- cGUAGCaUAUGCUAUCCuAAUUUAg- -3' miRNA: 3'- cCAUCGcAUACGAUAGGuUUGGAUau -5' |
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28941 | 5' | -45.8 | NC_006146.1 | + | 163077 | 0.74 | 0.977282 |
Target: 5'- gGGUAGCaUAUGCUAUCCuAAUUUAg- -3' miRNA: 3'- -CCAUCGcAUACGAUAGGuUUGGAUau -5' |
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28941 | 5' | -45.8 | NC_006146.1 | + | 163105 | 0.68 | 0.99967 |
Target: 5'- gGGUAGUGUAUaCUAUCCuAGCUUu-- -3' miRNA: 3'- -CCAUCGCAUAcGAUAGGuUUGGAuau -5' |
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28941 | 5' | -45.8 | NC_006146.1 | + | 163158 | 0.68 | 0.99967 |
Target: 5'- gGGUAGUGUAUaCUAUCCuAGCUUu-- -3' miRNA: 3'- -CCAUCGCAUAcGAUAGGuUUGGAuau -5' |
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28941 | 5' | -45.8 | NC_006146.1 | + | 163211 | 0.68 | 0.99967 |
Target: 5'- gGGUAGUGUAUaCUAUCCuAGCUUu-- -3' miRNA: 3'- -CCAUCGCAUAcGAUAGGuUUGGAuau -5' |
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28941 | 5' | -45.8 | NC_006146.1 | + | 163236 | 0.74 | 0.968528 |
Target: 5'- cGGUAGCaUAUGCUAUCCuAAUUUAg- -3' miRNA: 3'- -CCAUCGcAUACGAUAGGuUUGGAUau -5' |
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28941 | 5' | -45.8 | NC_006146.1 | + | 163264 | 0.74 | 0.977282 |
Target: 5'- gGGUAGCaUAUGCUAUCCuAAUUUAg- -3' miRNA: 3'- -CCAUCGcAUACGAUAGGuUUGGAUau -5' |
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28941 | 5' | -45.8 | NC_006146.1 | + | 163292 | 0.74 | 0.977282 |
Target: 5'- gGGUAGCaUAUGCUAUCCcAAUUUAg- -3' miRNA: 3'- -CCAUCGcAUACGAUAGGuUUGGAUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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