miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28942 3' -57.1 NC_006146.1 + 53466 0.66 0.88708
Target:  5'- cGGGaGGCGCGgg-UGCCucgucggucagGGCCGGGg -3'
miRNA:   3'- aCCUaUCGUGUaugACGG-----------CCGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 149931 0.66 0.858216
Target:  5'- gUGGGcuucUGGCGCucugAUGCUGCCagaaauaguuGCUGGGCc -3'
miRNA:   3'- -ACCU----AUCGUG----UAUGACGGc---------CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 11356 0.66 0.858216
Target:  5'- cGGGccUGGCGCAggcGCUGCgcgucaGGCagguGGGCa -3'
miRNA:   3'- aCCU--AUCGUGUa--UGACGg-----CCGg---CCCG- -5'
28942 3' -57.1 NC_006146.1 + 67207 0.66 0.865747
Target:  5'- cUGGccGUGGC-CGgucGCcugGCCGGCCaGGCa -3'
miRNA:   3'- -ACC--UAUCGuGUa--UGa--CGGCCGGcCCG- -5'
28942 3' -57.1 NC_006146.1 + 160676 0.66 0.893755
Target:  5'- aGGGccGGCACAUGaccaggGCCGGuaGaGGCa -3'
miRNA:   3'- aCCUa-UCGUGUAUga----CGGCCggC-CCG- -5'
28942 3' -57.1 NC_006146.1 + 126968 0.66 0.880183
Target:  5'- cUGGAUAGacccCGCccgACUGCCGGgcgacgcggucCCGGaGCu -3'
miRNA:   3'- -ACCUAUC----GUGua-UGACGGCC-----------GGCC-CG- -5'
28942 3' -57.1 NC_006146.1 + 163237 0.66 0.88708
Target:  5'- aGGGUAGCGC-UGCU-CCaGGaaccCCGGGUu -3'
miRNA:   3'- aCCUAUCGUGuAUGAcGG-CC----GGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 156087 0.66 0.858216
Target:  5'- gUGGGcuucUGGCGCucugAUGCUGCCagaaauaguuGCUGGGCc -3'
miRNA:   3'- -ACCU----AUCGUG----UAUGACGGc---------CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 104322 0.66 0.873071
Target:  5'- cUGG-UAGUaaaggcgauACA-GCUGCCGGCCcuuGGCg -3'
miRNA:   3'- -ACCuAUCG---------UGUaUGACGGCCGGc--CCG- -5'
28942 3' -57.1 NC_006146.1 + 155226 0.66 0.858216
Target:  5'- aGGu--GUACAgGCUGUgGGUCaGGGCg -3'
miRNA:   3'- aCCuauCGUGUaUGACGgCCGG-CCCG- -5'
28942 3' -57.1 NC_006146.1 + 146853 0.66 0.858216
Target:  5'- gUGGGcuucUGGCGCucugAUGCUGCCagaaauaguuGCUGGGCc -3'
miRNA:   3'- -ACCU----AUCGUG----UAUGACGGc---------CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 52301 0.66 0.873071
Target:  5'- aGGAUGucauGCGCGUagguGCUGaCCcugacgugGGCCGGGg -3'
miRNA:   3'- aCCUAU----CGUGUA----UGAC-GG--------CCGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 55684 0.66 0.873071
Target:  5'- aGGccAGCACGggcACgGCCGccGCCGGGg -3'
miRNA:   3'- aCCuaUCGUGUa--UGaCGGC--CGGCCCg -5'
28942 3' -57.1 NC_006146.1 + 153009 0.66 0.858216
Target:  5'- gUGGGcuucUGGCGCucugAUGCUGCCagaaauaguuGCUGGGCc -3'
miRNA:   3'- -ACCU----AUCGUG----UAUGACGGc---------CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 50178 0.66 0.88708
Target:  5'- gGGGgcguuuGCACuUGCgGCgGGCuCGGGUa -3'
miRNA:   3'- aCCUau----CGUGuAUGaCGgCCG-GCCCG- -5'
28942 3' -57.1 NC_006146.1 + 153096 0.66 0.858216
Target:  5'- gGGcgcgaGUAGCACAUGCUcUCGGagcCCGGGa -3'
miRNA:   3'- aCC-----UAUCGUGUAUGAcGGCC---GGCCCg -5'
28942 3' -57.1 NC_006146.1 + 143775 0.66 0.858216
Target:  5'- gUGGGcuucUGGCGCucugAUGCUGCCagaaauaguuGCUGGGCc -3'
miRNA:   3'- -ACCU----AUCGUG----UAUGACGGc---------CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 69680 0.66 0.858216
Target:  5'- gGGGUGGCAUAU-CUGaaGGCUGccaGGUg -3'
miRNA:   3'- aCCUAUCGUGUAuGACggCCGGC---CCG- -5'
28942 3' -57.1 NC_006146.1 + 147699 0.66 0.873071
Target:  5'- aGGAUGGCaACAggGCcaggaaGgCGGCgGGGCc -3'
miRNA:   3'- aCCUAUCG-UGUa-UGa-----CgGCCGgCCCG- -5'
28942 3' -57.1 NC_006146.1 + 120058 0.66 0.880183
Target:  5'- cUGG-UGGCGC-UGCUGC--GCCGGGa -3'
miRNA:   3'- -ACCuAUCGUGuAUGACGgcCGGCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.