miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28942 3' -57.1 NC_006146.1 + 3812 0.66 0.882968
Target:  5'- gGGAUGGcCACGccccccucacuuuuuUGgaGCCGGC-GGGUa -3'
miRNA:   3'- aCCUAUC-GUGU---------------AUgaCGGCCGgCCCG- -5'
28942 3' -57.1 NC_006146.1 + 5221 0.69 0.705605
Target:  5'- gGGGU-GCAgGUcCuUGCCGGCCucgGGGCu -3'
miRNA:   3'- aCCUAuCGUgUAuG-ACGGCCGG---CCCG- -5'
28942 3' -57.1 NC_006146.1 + 7030 0.68 0.773039
Target:  5'- aGGAUGGCAU--GCUGgaaUUGGCCcGGCa -3'
miRNA:   3'- aCCUAUCGUGuaUGAC---GGCCGGcCCG- -5'
28942 3' -57.1 NC_006146.1 + 9292 1.12 0.001469
Target:  5'- uUGGAUAGCACAUACUGCCGGCCGGGCa -3'
miRNA:   3'- -ACCUAUCGUGUAUGACGGCCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 9739 0.68 0.763704
Target:  5'- gGGGUAGUAUAUGCUaUCacCCGGGCa -3'
miRNA:   3'- aCCUAUCGUGUAUGAcGGccGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 11356 0.66 0.858216
Target:  5'- cGGGccUGGCGCAggcGCUGCgcgucaGGCagguGGGCa -3'
miRNA:   3'- aCCU--AUCGUGUa--UGACGg-----CCGg---CCCG- -5'
28942 3' -57.1 NC_006146.1 + 12872 0.69 0.744701
Target:  5'- cUGGGUGGCugGgcagGCCGGgucUCGGGUc -3'
miRNA:   3'- -ACCUAUCGugUaugaCGGCC---GGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 13537 0.67 0.834447
Target:  5'- gUGGAcAGgaACcUGCUGCagGcGCCGGGCg -3'
miRNA:   3'- -ACCUaUCg-UGuAUGACGg-C-CGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 14046 0.69 0.72531
Target:  5'- gGGGgcaGGCGCAaGC-GCCGGCUGGcuGCg -3'
miRNA:   3'- aCCUa--UCGUGUaUGaCGGCCGGCC--CG- -5'
28942 3' -57.1 NC_006146.1 + 14773 0.72 0.541769
Target:  5'- cGGGgcucgGGCACcuguuggcgGCUgaggggaaggagagGCCGGCCGGGCc -3'
miRNA:   3'- aCCUa----UCGUGua-------UGA--------------CGGCCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 15030 0.7 0.675612
Target:  5'- gGGAggGGCGCcugGCcaggGCCcGCCGGGCc -3'
miRNA:   3'- aCCUa-UCGUGua-UGa---CGGcCGGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 15950 0.71 0.604784
Target:  5'- cUGGGUGGCugGgcagGCCGGUcuCGGGUc -3'
miRNA:   3'- -ACCUAUCGugUaugaCGGCCG--GCCCG- -5'
28942 3' -57.1 NC_006146.1 + 16166 0.66 0.873071
Target:  5'- aGGA-AGCcgaGCGUugucuuGCUGCUGGCCgcccugguGGGCu -3'
miRNA:   3'- aCCUaUCG---UGUA------UGACGGCCGG--------CCCG- -5'
28942 3' -57.1 NC_006146.1 + 19027 0.69 0.744701
Target:  5'- cUGGGUGGCugGgcagGCCGGgucUCGGGUc -3'
miRNA:   3'- -ACCUAUCGugUaugaCGGCC---GGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 20208 0.66 0.880183
Target:  5'- aGGAggcugGGCAUGUACUGCgugcaggauuCGGCCcuGGUc -3'
miRNA:   3'- aCCUa----UCGUGUAUGACG----------GCCGGc-CCG- -5'
28942 3' -57.1 NC_006146.1 + 20563 0.75 0.388113
Target:  5'- cGGAagaggAGCACAgACUaGCCGGCCugcgcccGGGCg -3'
miRNA:   3'- aCCUa----UCGUGUaUGA-CGGCCGG-------CCCG- -5'
28942 3' -57.1 NC_006146.1 + 22105 0.69 0.744701
Target:  5'- cUGGGUGGCugGgcagGCCGGgucUCGGGUc -3'
miRNA:   3'- -ACCUAUCGugUaugaCGGCC---GGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 25183 0.69 0.744701
Target:  5'- cUGGGUGGCugGgcagGCCGGgucUCGGGUc -3'
miRNA:   3'- -ACCUAUCGugUaugaCGGCC---GGCCCG- -5'
28942 3' -57.1 NC_006146.1 + 27349 0.71 0.625033
Target:  5'- cGGGUGGCGCGgcaagGCCGGg-GGGCg -3'
miRNA:   3'- aCCUAUCGUGUauga-CGGCCggCCCG- -5'
28942 3' -57.1 NC_006146.1 + 28261 0.69 0.744701
Target:  5'- cUGGGUGGCugGgcagGCCGGgucUCGGGUc -3'
miRNA:   3'- -ACCUAUCGugUaugaCGGCC---GGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.