Results 1 - 20 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28942 | 3' | -57.1 | NC_006146.1 | + | 45398 | 0.7 | 0.645303 |
Target: 5'- gGGGUugAGCACGUcggugggccagcGCgagGCCccGGCCGGGUu -3' miRNA: 3'- aCCUA--UCGUGUA------------UGa--CGG--CCGGCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 168285 | 0.71 | 0.604784 |
Target: 5'- cGGcu-GCACGcgcgGCggcGCCGGCCGGGg -3' miRNA: 3'- aCCuauCGUGUa---UGa--CGGCCGGCCCg -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 169217 | 0.71 | 0.604784 |
Target: 5'- cGGcu-GCACGcgcgGCggcGCCGGCCGGGg -3' miRNA: 3'- aCCuauCGUGUa---UGa--CGGCCGGCCCg -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 170148 | 0.71 | 0.604784 |
Target: 5'- cGGcu-GCACGcgcgGCggcGCCGGCCGGGg -3' miRNA: 3'- aCCuauCGUGUa---UGa--CGGCCGGCCCg -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 51973 | 0.71 | 0.604784 |
Target: 5'- cGGggAGguCuccgGCaUGCgGGCCGGGCg -3' miRNA: 3'- aCCuaUCguGua--UG-ACGgCCGGCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 152231 | 0.71 | 0.614902 |
Target: 5'- cGuGAUAGCGuCGc-CUGCgaaGGCCGGGCa -3' miRNA: 3'- aC-CUAUCGU-GUauGACGg--CCGGCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 33235 | 0.71 | 0.614902 |
Target: 5'- cGGGUGGcCGCcgGCggGUCcGCCGGGCc -3' miRNA: 3'- aCCUAUC-GUGuaUGa-CGGcCGGCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 158866 | 0.71 | 0.635169 |
Target: 5'- cUGG-UGGCcgcacccgccACGUaGCUGCCGGUcuCGGGCa -3' miRNA: 3'- -ACCuAUCG----------UGUA-UGACGGCCG--GCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 112174 | 0.71 | 0.635169 |
Target: 5'- gUGuGGUGGCAUuggugGUGCUGgUGGCCuGGGUa -3' miRNA: 3'- -AC-CUAUCGUG-----UAUGACgGCCGG-CCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 167353 | 0.71 | 0.604784 |
Target: 5'- cGGcu-GCACGcgcgGCggcGCCGGCCGGGg -3' miRNA: 3'- aCCuauCGUGUa---UGa--CGGCCGGCCCg -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 15950 | 0.71 | 0.604784 |
Target: 5'- cUGGGUGGCugGgcagGCCGGUcuCGGGUc -3' miRNA: 3'- -ACCUAUCGugUaugaCGGCCG--GCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 98300 | 0.71 | 0.594685 |
Target: 5'- gUGGGgcugAGgGCGUGCUccgugGCCgucuggcacggGGCCGGGCg -3' miRNA: 3'- -ACCUa---UCgUGUAUGA-----CGG-----------CCGGCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 148523 | 0.79 | 0.22999 |
Target: 5'- aGGGUGGagaGCAUGCUGCUGGCCacugccaugauGGGUg -3' miRNA: 3'- aCCUAUCg--UGUAUGACGGCCGG-----------CCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 145711 | 0.75 | 0.414337 |
Target: 5'- gGGAgcaggAGCGCGUcagcuugaugucGCU-CUGGCCGGGCa -3' miRNA: 3'- aCCUa----UCGUGUA------------UGAcGGCCGGCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 46782 | 0.74 | 0.440726 |
Target: 5'- cGGAUGGCug-----GCCGGCCGGcGCg -3' miRNA: 3'- aCCUAUCGuguaugaCGGCCGGCC-CG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 48025 | 0.73 | 0.486731 |
Target: 5'- gGGGaGGCACGgcggGCCGGCuCGGGUc -3' miRNA: 3'- aCCUaUCGUGUaugaCGGCCG-GCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 167303 | 0.73 | 0.486731 |
Target: 5'- aGGGgccGGCGCcUGCaggggggGCCGGCgGGGCg -3' miRNA: 3'- aCCUa--UCGUGuAUGa------CGGCCGgCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 168235 | 0.73 | 0.486731 |
Target: 5'- aGGGgccGGCGCcUGCaggggggGCCGGCgGGGCg -3' miRNA: 3'- aCCUa--UCGUGuAUGa------CGGCCGgCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 169167 | 0.73 | 0.486731 |
Target: 5'- aGGGgccGGCGCcUGCaggggggGCCGGCgGGGCg -3' miRNA: 3'- aCCUa--UCGUGuAUGa------CGGCCGgCCCG- -5' |
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28942 | 3' | -57.1 | NC_006146.1 | + | 170084 | 0.71 | 0.582604 |
Target: 5'- gGGAUGGCcggcgggagggGCcgGCgccgcaggggggGCCGGCgGGGCg -3' miRNA: 3'- aCCUAUCG-----------UGuaUGa-----------CGGCCGgCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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