Results 61 - 69 of 69 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28942 | 5' | -49.9 | NC_006146.1 | + | 163035 | 0.68 | 0.988789 |
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Target: 5'- gCUAUCCuaauuuaGuuGGGUAGUGUAUACUAUCa -3' miRNA: 3'- -GAUAGG-------CcgCCCAUCAUGUAUGAUGG- -5' |
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| 28942 | 5' | -49.9 | NC_006146.1 | + | 163116 | 0.67 | 0.995919 |
|
Target: 5'- aCUAUCCuaGCuuucGGUAGcAUAUGCUACCc -3' miRNA: 3'- -GAUAGGc-CGc---CCAUCaUGUAUGAUGG- -5' |
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| 28942 | 5' | -49.9 | NC_006146.1 | + | 163303 | 0.79 | 0.616813 |
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Target: 5'- gCUAUCCcaauuuaGGUGGGUAGUGUAUACUAUCc -3' miRNA: 3'- -GAUAGG-------CCGCCCAUCAUGUAUGAUGG- -5' |
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| 28942 | 5' | -49.9 | NC_006146.1 | + | 163357 | 0.73 | 0.909399 |
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Target: 5'- uUAUCCuGauauguuaGGGUAGUAUAUGCUAUCc -3' miRNA: 3'- gAUAGGcCg-------CCCAUCAUGUAUGAUGG- -5' |
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| 28942 | 5' | -49.9 | NC_006146.1 | + | 167434 | 0.68 | 0.991392 |
|
Target: 5'- -gGUCCcggGGCGGGgGGUcgggcggGCAUGCU-CCg -3' miRNA: 3'- gaUAGG---CCGCCCaUCA-------UGUAUGAuGG- -5' |
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| 28942 | 5' | -49.9 | NC_006146.1 | + | 168366 | 0.68 | 0.991392 |
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Target: 5'- -gGUCCcggGGCGGGgGGUcgggcggGCAUGCU-CCg -3' miRNA: 3'- gaUAGG---CCGCCCaUCA-------UGUAUGAuGG- -5' |
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| 28942 | 5' | -49.9 | NC_006146.1 | + | 169298 | 0.68 | 0.991392 |
|
Target: 5'- -gGUCCcggGGCGGGgGGUcgggcggGCAUGCU-CCg -3' miRNA: 3'- gaUAGG---CCGCCCaUCA-------UGUAUGAuGG- -5' |
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| 28942 | 5' | -49.9 | NC_006146.1 | + | 170090 | 0.66 | 0.998248 |
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Target: 5'- ---gCCGGCGGGaGGgGCcgGC-GCCg -3' miRNA: 3'- gauaGGCCGCCCaUCaUGuaUGaUGG- -5' |
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| 28942 | 5' | -49.9 | NC_006146.1 | + | 170229 | 0.68 | 0.991392 |
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Target: 5'- -gGUCCcggGGCGGGgGGUcgggcggGCAUGCU-CCg -3' miRNA: 3'- gaUAGG---CCGCCCaUCA-------UGUAUGAuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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