Results 61 - 69 of 69 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28942 | 5' | -49.9 | NC_006146.1 | + | 34442 | 0.71 | 0.946776 |
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Target: 5'- gUGUCaccaGGUGGGUGGUACcuggaggucAUGCUAUUg -3' miRNA: 3'- gAUAGg---CCGCCCAUCAUG---------UAUGAUGG- -5' |
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| 28942 | 5' | -49.9 | NC_006146.1 | + | 33593 | 0.67 | 0.997048 |
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Target: 5'- -gGUCCGGUuuGGGUGG-GCGUGgU-CCg -3' miRNA: 3'- gaUAGGCCG--CCCAUCaUGUAUgAuGG- -5' |
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| 28942 | 5' | -49.9 | NC_006146.1 | + | 33244 | 0.66 | 0.998794 |
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Target: 5'- ---gCCGGCGGGUccgccGGgcC--GCUGCCc -3' miRNA: 3'- gauaGGCCGCCCA-----UCauGuaUGAUGG- -5' |
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| 28942 | 5' | -49.9 | NC_006146.1 | + | 33120 | 0.66 | 0.998248 |
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Target: 5'- ---gCCGGCGGGUucgcCGggccGCUGCCc -3' miRNA: 3'- gauaGGCCGCCCAucauGUa---UGAUGG- -5' |
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| 28942 | 5' | -49.9 | NC_006146.1 | + | 30607 | 0.72 | 0.921336 |
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Target: 5'- -aAUCCGGgGGGcAGUAUAUcCUACa -3' miRNA: 3'- gaUAGGCCgCCCaUCAUGUAuGAUGg -5' |
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| 28942 | 5' | -49.9 | NC_006146.1 | + | 18860 | 0.68 | 0.992605 |
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Target: 5'- gCUG-CCGGgGuGGUGG-ACGUGCggggGCCu -3' miRNA: 3'- -GAUaGGCCgC-CCAUCaUGUAUGa---UGG- -5' |
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| 28942 | 5' | -49.9 | NC_006146.1 | + | 10389 | 0.75 | 0.826815 |
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Target: 5'- -gGUCgCGGCucaGGGUGGUGCuGUGCUACa -3' miRNA: 3'- gaUAG-GCCG---CCCAUCAUG-UAUGAUGg -5' |
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| 28942 | 5' | -49.9 | NC_006146.1 | + | 9735 | 0.69 | 0.985785 |
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Target: 5'- --uUCUG--GGGUAGUAUAUGCUAUCa -3' miRNA: 3'- gauAGGCcgCCCAUCAUGUAUGAUGG- -5' |
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| 28942 | 5' | -49.9 | NC_006146.1 | + | 9326 | 1.12 | 0.008814 |
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Target: 5'- gCUAUCCGGCGGGUAGUACAUACUACCc -3' miRNA: 3'- -GAUAGGCCGCCCAUCAUGUAUGAUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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