miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28942 5' -49.9 NC_006146.1 + 9326 1.12 0.008814
Target:  5'- gCUAUCCGGCGGGUAGUACAUACUACCc -3'
miRNA:   3'- -GAUAGGCCGCCCAUCAUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 163303 0.79 0.616813
Target:  5'- gCUAUCCcaauuuaGGUGGGUAGUGUAUACUAUCc -3'
miRNA:   3'- -GAUAGG-------CCGCCCAUCAUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 136709 0.75 0.818042
Target:  5'- --cUCCGGCGGGgGGUGgcCGgccGCUGCCg -3'
miRNA:   3'- gauAGGCCGCCCaUCAU--GUa--UGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 10389 0.75 0.826815
Target:  5'- -gGUCgCGGCucaGGGUGGUGCuGUGCUACa -3'
miRNA:   3'- gaUAG-GCCG---CCCAUCAUG-UAUGAUGg -5'
28942 5' -49.9 NC_006146.1 + 136151 0.74 0.851979
Target:  5'- --cUCCGGCGGGgGGUGgcCGggccGCUGCCg -3'
miRNA:   3'- gauAGGCCGCCCaUCAU--GUa---UGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 136244 0.74 0.851979
Target:  5'- --cUCCGGCGGGgGGUGgcCGggccGCUGCCg -3'
miRNA:   3'- gauAGGCCGCCCaUCAU--GUa---UGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 136337 0.74 0.851979
Target:  5'- --cUCCGGCGGGgGGUGgcCGggccGCUGCCg -3'
miRNA:   3'- gauAGGCCGCCCaUCAU--GUa---UGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 136430 0.74 0.851979
Target:  5'- --cUCCGGCGGGgGGUGgcCGggccGCUGCCg -3'
miRNA:   3'- gauAGGCCGCCCaUCAU--GUa---UGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 136523 0.74 0.851979
Target:  5'- --cUCCGGCGGGgGGUGgcCGggccGCUGCCg -3'
miRNA:   3'- gauAGGCCGCCCaUCAU--GUa---UGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 136616 0.74 0.851979
Target:  5'- --cUCCGGCGGGgGGUGgcCGggccGCUGCCg -3'
miRNA:   3'- gauAGGCCGCCCaUCAU--GUa---UGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 136801 0.74 0.851979
Target:  5'- --cUCCGGCGGGgGGUGgcCGggccGCUGCCg -3'
miRNA:   3'- gauAGGCCGCCCaUCAU--GUa---UGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 136058 0.74 0.851979
Target:  5'- --cUCCGGCGGGgGGUGgcCGggccGCUGCCg -3'
miRNA:   3'- gauAGGCCGCCCaUCAU--GUa---UGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 135965 0.74 0.851979
Target:  5'- --cUCCGGCGGGgGGUGgcCGggccGCUGCCg -3'
miRNA:   3'- gauAGGCCGCCCaUCAU--GUa---UGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 135872 0.74 0.851979
Target:  5'- --cUCCGGCGGGgGGUGgcCGggccGCUGCCg -3'
miRNA:   3'- gauAGGCCGCCCaUCAU--GUa---UGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 135779 0.74 0.851979
Target:  5'- --cUCCGGCGGGgGGUGgcCGggccGCUGCCg -3'
miRNA:   3'- gauAGGCCGCCCaUCAU--GUa---UGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 135687 0.74 0.851979
Target:  5'- --cUCCGGCGGGgGGUGgcCGggccGCUGCCg -3'
miRNA:   3'- gauAGGCCGCCCaUCAU--GUa---UGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 135501 0.74 0.851979
Target:  5'- --cUCCGGCGGGgGGUGgcCGggccGCUGCCg -3'
miRNA:   3'- gauAGGCCGCCCaUCAU--GUa---UGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 135408 0.74 0.851979
Target:  5'- --cUCCGGCGGGgGGUGgcCGggccGCUGCCg -3'
miRNA:   3'- gauAGGCCGCCCaUCAU--GUa---UGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 135315 0.74 0.851979
Target:  5'- --cUCCGGCGGGgGGUGgcCGggccGCUGCCg -3'
miRNA:   3'- gauAGGCCGCCCaUCAU--GUa---UGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 136894 0.74 0.851979
Target:  5'- --cUCCGGCGGGgGGUGgcCGggccGCUGCCg -3'
miRNA:   3'- gauAGGCCGCCCaUCAU--GUa---UGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.