miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28942 5' -49.9 NC_006146.1 + 9326 1.12 0.008814
Target:  5'- gCUAUCCGGCGGGUAGUACAUACUACCc -3'
miRNA:   3'- -GAUAGGCCGCCCAUCAUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 9735 0.69 0.985785
Target:  5'- --uUCUG--GGGUAGUAUAUGCUAUCa -3'
miRNA:   3'- gauAGGCcgCCCAUCAUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 10389 0.75 0.826815
Target:  5'- -gGUCgCGGCucaGGGUGGUGCuGUGCUACa -3'
miRNA:   3'- gaUAG-GCCG---CCCAUCAUG-UAUGAUGg -5'
28942 5' -49.9 NC_006146.1 + 18860 0.68 0.992605
Target:  5'- gCUG-CCGGgGuGGUGG-ACGUGCggggGCCu -3'
miRNA:   3'- -GAUaGGCCgC-CCAUCaUGUAUGa---UGG- -5'
28942 5' -49.9 NC_006146.1 + 30607 0.72 0.921336
Target:  5'- -aAUCCGGgGGGcAGUAUAUcCUACa -3'
miRNA:   3'- gaUAGGCCgCCCaUCAUGUAuGAUGg -5'
28942 5' -49.9 NC_006146.1 + 33120 0.66 0.998248
Target:  5'- ---gCCGGCGGGUucgcCGggccGCUGCCc -3'
miRNA:   3'- gauaGGCCGCCCAucauGUa---UGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 33244 0.66 0.998794
Target:  5'- ---gCCGGCGGGUccgccGGgcC--GCUGCCc -3'
miRNA:   3'- gauaGGCCGCCCA-----UCauGuaUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 33593 0.67 0.997048
Target:  5'- -gGUCCGGUuuGGGUGG-GCGUGgU-CCg -3'
miRNA:   3'- gaUAGGCCG--CCCAUCaUGUAUgAuGG- -5'
28942 5' -49.9 NC_006146.1 + 34442 0.71 0.946776
Target:  5'- gUGUCaccaGGUGGGUGGUACcuggaggucAUGCUAUUg -3'
miRNA:   3'- gAUAGg---CCGCCCAUCAUG---------UAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 36173 0.67 0.99446
Target:  5'- ---cCUGGCuGGccUGGUGCAUGCaUGCCu -3'
miRNA:   3'- gauaGGCCGcCC--AUCAUGUAUG-AUGG- -5'
28942 5' -49.9 NC_006146.1 + 41707 0.72 0.921336
Target:  5'- ---aCCGGCGGGgGGUGCGgcGCUgugGCCu -3'
miRNA:   3'- gauaGGCCGCCCaUCAUGUa-UGA---UGG- -5'
28942 5' -49.9 NC_006146.1 + 43003 0.67 0.995235
Target:  5'- ---gCCGcCGGGUgagaGGUGCGaggGCUGCCg -3'
miRNA:   3'- gauaGGCcGCCCA----UCAUGUa--UGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 43940 0.68 0.992501
Target:  5'- gUGUuuGaaaaggcGCGGGaUAGUGUAUGCUACCu -3'
miRNA:   3'- gAUAggC-------CGCCC-AUCAUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 43976 0.7 0.966086
Target:  5'- ----aUGGCGGGUAaUAUAUGCUAUCc -3'
miRNA:   3'- gauagGCCGCCCAUcAUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 57932 0.66 0.998515
Target:  5'- gCUggCCGGCGccgccauGGUGcUGCAUcaccACUGCCa -3'
miRNA:   3'- -GAuaGGCCGC-------CCAUcAUGUA----UGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 59433 0.68 0.992501
Target:  5'- gUAUgCCGGgGGGUGGUuucacugGCAcgACUggGCCg -3'
miRNA:   3'- gAUA-GGCCgCCCAUCA-------UGUa-UGA--UGG- -5'
28942 5' -49.9 NC_006146.1 + 63012 0.69 0.987435
Target:  5'- -aGUCUGGCGGGUGcccgACGUA--ACCu -3'
miRNA:   3'- gaUAGGCCGCCCAUca--UGUAUgaUGG- -5'
28942 5' -49.9 NC_006146.1 + 69675 0.66 0.998248
Target:  5'- ---gCUGGgGGGUGGcAUAUcugaagGCUGCCa -3'
miRNA:   3'- gauaGGCCgCCCAUCaUGUA------UGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 77314 0.7 0.977492
Target:  5'- ---cCCGGCGGGUcGcGCAUGCccagGCUg -3'
miRNA:   3'- gauaGGCCGCCCAuCaUGUAUGa---UGG- -5'
28942 5' -49.9 NC_006146.1 + 99055 0.66 0.997506
Target:  5'- ---cCCGGCGGGUGucgGCGg--UGCCg -3'
miRNA:   3'- gauaGGCCGCCCAUca-UGUaugAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.