miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28942 5' -49.9 NC_006146.1 + 169298 0.68 0.991392
Target:  5'- -gGUCCcggGGCGGGgGGUcgggcggGCAUGCU-CCg -3'
miRNA:   3'- gaUAGG---CCGCCCaUCA-------UGUAUGAuGG- -5'
28942 5' -49.9 NC_006146.1 + 137991 0.68 0.989491
Target:  5'- ---cCCGGCGGGguggggGGUGCGcccccagccggacccUGgUGCCa -3'
miRNA:   3'- gauaGGCCGCCCa-----UCAUGU---------------AUgAUGG- -5'
28942 5' -49.9 NC_006146.1 + 163035 0.68 0.988789
Target:  5'- gCUAUCCuaauuuaGuuGGGUAGUGUAUACUAUCa -3'
miRNA:   3'- -GAUAGG-------CcgCCCAUCAUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 63012 0.69 0.987435
Target:  5'- -aGUCUGGCGGGUGcccgACGUA--ACCu -3'
miRNA:   3'- gaUAGGCCGCCCAUca--UGUAUgaUGG- -5'
28942 5' -49.9 NC_006146.1 + 118343 0.69 0.985785
Target:  5'- ---gCCGGCGGGcgcGUgaACAU-CUACCg -3'
miRNA:   3'- gauaGGCCGCCCau-CA--UGUAuGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 9735 0.69 0.985785
Target:  5'- --uUCUG--GGGUAGUAUAUGCUAUCa -3'
miRNA:   3'- gauAGGCcgCCCAUCAUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 148514 0.69 0.981995
Target:  5'- ---cCCGGggccaGGGUGGagaGCAUGCUGCUg -3'
miRNA:   3'- gauaGGCCg----CCCAUCa--UGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 77314 0.7 0.977492
Target:  5'- ---cCCGGCGGGUcGcGCAUGCccagGCUg -3'
miRNA:   3'- gauaGGCCGCCCAuCaUGUAUGa---UGG- -5'
28942 5' -49.9 NC_006146.1 + 161606 0.7 0.977492
Target:  5'- gCUGcCCGGCcGGcAGUAUGUGCUAUCc -3'
miRNA:   3'- -GAUaGGCCGcCCaUCAUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 161557 0.7 0.974952
Target:  5'- ---aCCaGCaaacccuaguuGGGUAGUAUGUACUACCc -3'
miRNA:   3'- gauaGGcCG-----------CCCAUCAUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 43976 0.7 0.966086
Target:  5'- ----aUGGCGGGUAaUAUAUGCUAUCc -3'
miRNA:   3'- gauagGCCGCCCAUcAUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 34442 0.71 0.946776
Target:  5'- gUGUCaccaGGUGGGUGGUACcuggaggucAUGCUAUUg -3'
miRNA:   3'- gAUAGg---CCGCCCAUCAUG---------UAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 162957 0.72 0.926928
Target:  5'- gCUAUCUuaauaGCGGGUAGcAUAUACUAUCc -3'
miRNA:   3'- -GAUAGGc----CGCCCAUCaUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 41707 0.72 0.921336
Target:  5'- ---aCCGGCGGGgGGUGCGgcGCUgugGCCu -3'
miRNA:   3'- gauaGGCCGCCCaUCAUGUa-UGA---UGG- -5'
28942 5' -49.9 NC_006146.1 + 30607 0.72 0.921336
Target:  5'- -aAUCCGGgGGGcAGUAUAUcCUACa -3'
miRNA:   3'- gaUAGGCCgCCCaUCAUGUAuGAUGg -5'
28942 5' -49.9 NC_006146.1 + 138272 0.73 0.915493
Target:  5'- gUGUCCacaGGUGGGUGGUACcuggaggugAUGCUAUUg -3'
miRNA:   3'- gAUAGG---CCGCCCAUCAUG---------UAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 163357 0.73 0.909399
Target:  5'- uUAUCCuGauauguuaGGGUAGUAUAUGCUAUCc -3'
miRNA:   3'- gAUAGGcCg-------CCCAUCAUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 101830 0.73 0.903055
Target:  5'- -aGUUCGGCGGGgcccgAGcGCucggGCUGCCg -3'
miRNA:   3'- gaUAGGCCGCCCa----UCaUGua--UGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 162903 0.74 0.859956
Target:  5'- gCUAUCCuaguacaGCuGGGUAGUAUAUGCUGuCCu -3'
miRNA:   3'- -GAUAGGc------CG-CCCAUCAUGUAUGAU-GG- -5'
28942 5' -49.9 NC_006146.1 + 137545 0.74 0.851979
Target:  5'- --cUCCGGCGGGgGGUGgcCGggccGCUGCCg -3'
miRNA:   3'- gauAGGCCGCCCaUCAU--GUa---UGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.