miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28943 5' -55.2 NC_006146.1 + 73366 0.68 0.856114
Target:  5'- --uAGGCAC-CGaagGGGUGCgGUGUUGg -3'
miRNA:   3'- cauUCCGUGcGCa--CCUACGgCGCAAC- -5'
28943 5' -55.2 NC_006146.1 + 53522 0.69 0.814748
Target:  5'- --cGGGcCGCGCGUGuGAagGCCGCGa-- -3'
miRNA:   3'- cauUCC-GUGCGCAC-CUa-CGGCGCaac -5'
28943 5' -55.2 NC_006146.1 + 120512 0.71 0.740352
Target:  5'- -cGAGGaCGCgagccGCGUGGAUGCgGCGgcGg -3'
miRNA:   3'- caUUCC-GUG-----CGCACCUACGgCGCaaC- -5'
28943 5' -55.2 NC_006146.1 + 168206 0.71 0.720617
Target:  5'- -cGGGGcCGCGCGUGGGgaugGCCgGCGg-- -3'
miRNA:   3'- caUUCC-GUGCGCACCUa---CGG-CGCaac -5'
28943 5' -55.2 NC_006146.1 + 169138 0.71 0.720617
Target:  5'- -cGGGGcCGCGCGUGGGgaugGCCgGCGg-- -3'
miRNA:   3'- caUUCC-GUGCGCACCUa---CGG-CGCaac -5'
28943 5' -55.2 NC_006146.1 + 170070 0.71 0.720617
Target:  5'- -cGGGGcCGCGCGUGGGgaugGCCgGCGg-- -3'
miRNA:   3'- caUUCC-GUGCGCACCUa---CGG-CGCaac -5'
28943 5' -55.2 NC_006146.1 + 167274 0.71 0.720617
Target:  5'- -cGGGGcCGCGCGUGGGgaugGCCgGCGg-- -3'
miRNA:   3'- caUUCC-GUGCGCACCUa---CGG-CGCaac -5'
28943 5' -55.2 NC_006146.1 + 169419 0.72 0.676226
Target:  5'- -gGAGGcCACGUGUGGAggcccgcggagagGCCGUGUg- -3'
miRNA:   3'- caUUCC-GUGCGCACCUa------------CGGCGCAac -5'
28943 5' -55.2 NC_006146.1 + 170350 0.72 0.676226
Target:  5'- -gGAGGcCACGUGUGGAggcccgcggagagGCCGUGUg- -3'
miRNA:   3'- caUUCC-GUGCGCACCUa------------CGGCGCAac -5'
28943 5' -55.2 NC_006146.1 + 167555 0.72 0.676226
Target:  5'- -gGAGGcCACGUGUGGAggcccgcggagagGCCGUGUg- -3'
miRNA:   3'- caUUCC-GUGCGCACCUa------------CGGCGCAac -5'
28943 5' -55.2 NC_006146.1 + 168487 0.72 0.676226
Target:  5'- -gGAGGcCACGUGUGGAggcccgcggagagGCCGUGUg- -3'
miRNA:   3'- caUUCC-GUGCGCACCUa------------CGGCGCAac -5'
28943 5' -55.2 NC_006146.1 + 110887 0.73 0.608537
Target:  5'- --cGGGCGCagGCGgGGAcgggGCCGCGUUGg -3'
miRNA:   3'- cauUCCGUG--CGCaCCUa---CGGCGCAAC- -5'
28943 5' -55.2 NC_006146.1 + 145566 0.73 0.588073
Target:  5'- --cGGGaACGUGUGGAUGCgCGCGUa- -3'
miRNA:   3'- cauUCCgUGCGCACCUACG-GCGCAac -5'
28943 5' -55.2 NC_006146.1 + 69723 0.77 0.397893
Target:  5'- -aGGGGCGCaGCGUGGAguuguaGCgGCGUUGg -3'
miRNA:   3'- caUUCCGUG-CGCACCUa-----CGgCGCAAC- -5'
28943 5' -55.2 NC_006146.1 + 9633 1.09 0.003712
Target:  5'- uGUAAGGCACGCGUGGAUGCCGCGUUGg -3'
miRNA:   3'- -CAUUCCGUGCGCACCUACGGCGCAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.