miRNA display CGI


Results 41 - 60 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 3' -61.9 NC_006146.1 + 97974 0.67 0.614933
Target:  5'- --cGGGGAagaugGGGCgGCugGCCAGCUc-- -3'
miRNA:   3'- ucaCCCCU-----CCCG-UGugCGGUCGAccg -5'
28944 3' -61.9 NC_006146.1 + 114351 0.67 0.575764
Target:  5'- aGGUGGacGGGGGCcuggcccgcgugACGCGUCAGCUgcugauggccGGCg -3'
miRNA:   3'- -UCACCc-CUCCCG------------UGUGCGGUCGA----------CCG- -5'
28944 3' -61.9 NC_006146.1 + 96825 0.67 0.605107
Target:  5'- uGGUGGGGAcGGGCGgGCa--GGUUGGg -3'
miRNA:   3'- -UCACCCCU-CCCGUgUGcggUCGACCg -5'
28944 3' -61.9 NC_006146.1 + 45526 0.67 0.61395
Target:  5'- cGGUGGGGGccugggccuccuuGGGC-UugGCCGccCUGGCc -3'
miRNA:   3'- -UCACCCCU-------------CCCGuGugCGGUc-GACCG- -5'
28944 3' -61.9 NC_006146.1 + 68030 0.67 0.575764
Target:  5'- -cUGGGGcccGGC-CACGaCCAGgUGGCg -3'
miRNA:   3'- ucACCCCuc-CCGuGUGC-GGUCgACCG- -5'
28944 3' -61.9 NC_006146.1 + 3379 0.67 0.624772
Target:  5'- --aGGGGccgGGGGCGCggcccgGCGCCAGCccuGCc -3'
miRNA:   3'- ucaCCCC---UCCCGUG------UGCGGUCGac-CG- -5'
28944 3' -61.9 NC_006146.1 + 2447 0.67 0.624772
Target:  5'- --aGGGGccgGGGGCGCggcccgGCGCCAGCccuGCc -3'
miRNA:   3'- ucaCCCC---UCCCGUG------UGCGGUCGac-CG- -5'
28944 3' -61.9 NC_006146.1 + 2786 0.67 0.581611
Target:  5'- ---cGGGAccccGGGCGCGCGCCGGCcucccgucccgaaGGCc -3'
miRNA:   3'- ucacCCCU----CCCGUGUGCGGUCGa------------CCG- -5'
28944 3' -61.9 NC_006146.1 + 922 0.67 0.581611
Target:  5'- ---cGGGAccccGGGCGCGCGCCGGCcucccgucccgaaGGCc -3'
miRNA:   3'- ucacCCCU----CCCGUGUGCGGUCGa------------CCG- -5'
28944 3' -61.9 NC_006146.1 + 1854 0.67 0.581611
Target:  5'- ---cGGGAccccGGGCGCGCGCCGGCcucccgucccgaaGGCc -3'
miRNA:   3'- ucacCCCU----CCCGUGUGCGGUCGa------------CCG- -5'
28944 3' -61.9 NC_006146.1 + 3718 0.67 0.581611
Target:  5'- ---cGGGAccccGGGCGCGCGCCGGCcucccgucccgaaGGCc -3'
miRNA:   3'- ucacCCCU----CCCGUGUGCGGUCGa------------CCG- -5'
28944 3' -61.9 NC_006146.1 + 160114 0.67 0.599219
Target:  5'- uAGUGGaGGAuagagugaauGGGCggcggacuuuggcagGCugGCCuuuaaggccAGCUGGCg -3'
miRNA:   3'- -UCACC-CCU----------CCCG---------------UGugCGG---------UCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 124150 0.67 0.605107
Target:  5'- gGGUcGGGAGGcGaggaccCugGCCAGCgUGGCc -3'
miRNA:   3'- -UCAcCCCUCC-Cgu----GugCGGUCG-ACCG- -5'
28944 3' -61.9 NC_006146.1 + 96118 0.67 0.623787
Target:  5'- gAGUGGGGGuucuGGuGCACacucuuuccuGCGUCuuggccccccggaGGCUGGCu -3'
miRNA:   3'- -UCACCCCU----CC-CGUG----------UGCGG-------------UCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 1515 0.67 0.624772
Target:  5'- --aGGGGccgGGGGCGCggcccgGCGCCAGCccuGCc -3'
miRNA:   3'- ucaCCCC---UCCCGUG------UGCGGUCGac-CG- -5'
28944 3' -61.9 NC_006146.1 + 584 0.67 0.624772
Target:  5'- --aGGGGccgGGGGCGCggcccgGCGCCAGCccuGCc -3'
miRNA:   3'- ucaCCCC---UCCCGUG------UGCGGUCGac-CG- -5'
28944 3' -61.9 NC_006146.1 + 101906 0.68 0.546754
Target:  5'- cGUGGGuGGGGUuuagaaAUGCGCCGG-UGGCc -3'
miRNA:   3'- uCACCCcUCCCG------UGUGCGGUCgACCG- -5'
28944 3' -61.9 NC_006146.1 + 44019 0.68 0.556378
Target:  5'- uGUGGGGAGGGUcuuUugGCUcaaAGCcGGg -3'
miRNA:   3'- uCACCCCUCCCGu--GugCGG---UCGaCCg -5'
28944 3' -61.9 NC_006146.1 + 126625 0.68 0.556378
Target:  5'- cGGUGGucGGuGGGCACACcccgggGCCcGCaggGGCa -3'
miRNA:   3'- -UCACC--CCuCCCGUGUG------CGGuCGa--CCG- -5'
28944 3' -61.9 NC_006146.1 + 150687 0.68 0.556378
Target:  5'- gAGUGGccagggggacGGAGGGC-CugGCCuGCgGGg -3'
miRNA:   3'- -UCACC----------CCUCCCGuGugCGGuCGaCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.