miRNA display CGI


Results 61 - 80 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 3' -61.9 NC_006146.1 + 126625 0.68 0.556378
Target:  5'- cGGUGGucGGuGGGCACACcccgggGCCcGCaggGGCa -3'
miRNA:   3'- -UCACC--CCuCCCGUGUG------CGGuCGa--CCG- -5'
28944 3' -61.9 NC_006146.1 + 156988 0.68 0.527673
Target:  5'- gAGgagGGGGAggcGGGCGCccuUGCCuGgaGGCa -3'
miRNA:   3'- -UCa--CCCCU---CCCGUGu--GCGGuCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 147754 0.68 0.527673
Target:  5'- gAGgagGGGGAggcGGGCGCccuUGCCuGgaGGCa -3'
miRNA:   3'- -UCa--CCCCU---CCCGUGu--GCGGuCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 14334 0.68 0.56605
Target:  5'- aAGUaGGGAcucaGGCcauGCGCGcCCAGUUGGCg -3'
miRNA:   3'- -UCAcCCCUc---CCG---UGUGC-GGUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 89941 0.68 0.526726
Target:  5'- gGGUGGGGugguGGGUACAgguggauUGUCAGaugggcCUGGCu -3'
miRNA:   3'- -UCACCCCu---CCCGUGU-------GCGGUC------GACCG- -5'
28944 3' -61.9 NC_006146.1 + 136640 0.68 0.518225
Target:  5'- --cGGGGGGuGCACAacccccaGCCGGCccGGCg -3'
miRNA:   3'- ucaCCCCUCcCGUGUg------CGGUCGa-CCG- -5'
28944 3' -61.9 NC_006146.1 + 150832 0.68 0.527673
Target:  5'- gAGgagGGGGAggcGGGCGCccuUGCCuGgaGGCa -3'
miRNA:   3'- -UCa--CCCCU---CCCGUGu--GCGGuCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 156842 0.68 0.56605
Target:  5'- gAGUGGccagggaggacGGAGGGC-CugGCCuGCgGGg -3'
miRNA:   3'- -UCACC-----------CCUCCCGuGugCGGuCGaCCg -5'
28944 3' -61.9 NC_006146.1 + 17412 0.68 0.56605
Target:  5'- aAGUaGGGAcucaGGCcauGCGCGcCCAGUUGGCg -3'
miRNA:   3'- -UCAcCCCUc---CCG---UGUGC-GGUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 20490 0.68 0.56605
Target:  5'- aAGUaGGGAcucaGGCcauGCGCGcCCAGUUGGCg -3'
miRNA:   3'- -UCAcCCCUc---CCG---UGUGC-GGUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 100245 0.68 0.536231
Target:  5'- cAGUGGGGgcguucacgcacgGGGGCucCAUggaGCCuccuagcgggGGCUGGCa -3'
miRNA:   3'- -UCACCCC-------------UCCCGu-GUG---CGG----------UCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 69673 0.68 0.546754
Target:  5'- cAGcUGGGGGGuGGCAUAUcugaaggcuGCCAGgUGGa -3'
miRNA:   3'- -UC-ACCCCUC-CCGUGUG---------CGGUCgACCg -5'
28944 3' -61.9 NC_006146.1 + 112288 0.68 0.541006
Target:  5'- uAGUGGGGGgcuGGGUugAUGCCcccguagauguauugGcGCUGGUc -3'
miRNA:   3'- -UCACCCCU---CCCGugUGCGG---------------U-CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 155575 0.68 0.546754
Target:  5'- --cGGGGcgcccgccaGGGGCACACcggGGCUGGCc -3'
miRNA:   3'- ucaCCCC---------UCCCGUGUGcggUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 26646 0.68 0.56605
Target:  5'- aAGUaGGGAcucaGGCcauGCGCGcCCAGUUGGCg -3'
miRNA:   3'- -UCAcCCCUc---CCG---UGUGC-GGUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 23568 0.68 0.56605
Target:  5'- aAGUaGGGAcucaGGCcauGCGCGcCCAGUUGGCg -3'
miRNA:   3'- -UCAcCCCUc---CCG---UGUGC-GGUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 144677 0.68 0.527673
Target:  5'- gAGgagGGGGAggcGGGCGCccuUGCCuGgaGGCg -3'
miRNA:   3'- -UCa--CCCCU---CCCGUGu--GCGGuCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 141453 0.68 0.56605
Target:  5'- gAGUGGccagggaggacGGAGGGC-CugGCCuGCgGGg -3'
miRNA:   3'- -UCACC-----------CCUCCCGuGugCGGuCGaCCg -5'
28944 3' -61.9 NC_006146.1 + 44019 0.68 0.556378
Target:  5'- uGUGGGGAGGGUcuuUugGCUcaaAGCcGGg -3'
miRNA:   3'- uCACCCCUCCCGu--GugCGG---UCGaCCg -5'
28944 3' -61.9 NC_006146.1 + 57921 0.68 0.545795
Target:  5'- -aUGcaGAGGGCGCugGCCGGCgccgccaUGGUg -3'
miRNA:   3'- ucACccCUCCCGUGugCGGUCG-------ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.