Results 81 - 100 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28944 | 3' | -61.9 | NC_006146.1 | + | 126625 | 0.68 | 0.556378 |
Target: 5'- cGGUGGucGGuGGGCACACcccgggGCCcGCaggGGCa -3' miRNA: 3'- -UCACC--CCuCCCGUGUG------CGGuCGa--CCG- -5' |
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28944 | 3' | -61.9 | NC_006146.1 | + | 112288 | 0.68 | 0.541006 |
Target: 5'- uAGUGGGGGgcuGGGUugAUGCCcccguagauguauugGcGCUGGUc -3' miRNA: 3'- -UCACCCCU---CCCGugUGCGG---------------U-CGACCG- -5' |
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28944 | 3' | -61.9 | NC_006146.1 | + | 69673 | 0.68 | 0.546754 |
Target: 5'- cAGcUGGGGGGuGGCAUAUcugaaggcuGCCAGgUGGa -3' miRNA: 3'- -UC-ACCCCUC-CCGUGUG---------CGGUCgACCg -5' |
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28944 | 3' | -61.9 | NC_006146.1 | + | 153910 | 0.68 | 0.527673 |
Target: 5'- gAGgagGGGGAggcGGGCGCccuUGCCuGgaGGCa -3' miRNA: 3'- -UCa--CCCCU---CCCGUGu--GCGGuCgaCCG- -5' |
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28944 | 3' | -61.9 | NC_006146.1 | + | 26646 | 0.68 | 0.56605 |
Target: 5'- aAGUaGGGAcucaGGCcauGCGCGcCCAGUUGGCg -3' miRNA: 3'- -UCAcCCCUc---CCG---UGUGC-GGUCGACCG- -5' |
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28944 | 3' | -61.9 | NC_006146.1 | + | 23568 | 0.68 | 0.56605 |
Target: 5'- aAGUaGGGAcucaGGCcauGCGCGcCCAGUUGGCg -3' miRNA: 3'- -UCAcCCCUc---CCG---UGUGC-GGUCGACCG- -5' |
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28944 | 3' | -61.9 | NC_006146.1 | + | 57921 | 0.68 | 0.545795 |
Target: 5'- -aUGcaGAGGGCGCugGCCGGCgccgccaUGGUg -3' miRNA: 3'- ucACccCUCCCGUGugCGGUCG-------ACCG- -5' |
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28944 | 3' | -61.9 | NC_006146.1 | + | 20490 | 0.68 | 0.56605 |
Target: 5'- aAGUaGGGAcucaGGCcauGCGCGcCCAGUUGGCg -3' miRNA: 3'- -UCAcCCCUc---CCG---UGUGC-GGUCGACCG- -5' |
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28944 | 3' | -61.9 | NC_006146.1 | + | 155575 | 0.68 | 0.546754 |
Target: 5'- --cGGGGcgcccgccaGGGGCACACcggGGCUGGCc -3' miRNA: 3'- ucaCCCC---------UCCCGUGUGcggUCGACCG- -5' |
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28944 | 3' | -61.9 | NC_006146.1 | + | 100839 | 0.68 | 0.56605 |
Target: 5'- uGUGGGGAGguGGCACugaucaaggccCGCCGGaaGGUc -3' miRNA: 3'- uCACCCCUC--CCGUGu----------GCGGUCgaCCG- -5' |
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28944 | 3' | -61.9 | NC_006146.1 | + | 17412 | 0.68 | 0.56605 |
Target: 5'- aAGUaGGGAcucaGGCcauGCGCGcCCAGUUGGCg -3' miRNA: 3'- -UCAcCCCUc---CCG---UGUGC-GGUCGACCG- -5' |
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28944 | 3' | -61.9 | NC_006146.1 | + | 14334 | 0.68 | 0.56605 |
Target: 5'- aAGUaGGGAcucaGGCcauGCGCGcCCAGUUGGCg -3' miRNA: 3'- -UCAcCCCUc---CCG---UGUGC-GGUCGACCG- -5' |
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28944 | 3' | -61.9 | NC_006146.1 | + | 137998 | 0.69 | 0.490306 |
Target: 5'- gGGUGGGGGGuGCGCccccaGCCGGaccCUGGUg -3' miRNA: 3'- -UCACCCCUCcCGUGug---CGGUC---GACCG- -5' |
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28944 | 3' | -61.9 | NC_006146.1 | + | 99078 | 0.69 | 0.481155 |
Target: 5'- uAGUGGuGGAGGGCcCGCaGCCAGgUccGCa -3' miRNA: 3'- -UCACC-CCUCCCGuGUG-CGGUCgAc-CG- -5' |
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28944 | 3' | -61.9 | NC_006146.1 | + | 157612 | 0.69 | 0.481155 |
Target: 5'- cGUGGGGGuagucgcgggcGGGCAC-CGCCugGGUcuugGGCa -3' miRNA: 3'- uCACCCCU-----------CCCGUGuGCGG--UCGa---CCG- -5' |
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28944 | 3' | -61.9 | NC_006146.1 | + | 98298 | 0.69 | 0.481155 |
Target: 5'- cGGUGGGGcugAGGGCGUGCuccgugGCCGuCUGGCa -3' miRNA: 3'- -UCACCCC---UCCCGUGUG------CGGUcGACCG- -5' |
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28944 | 3' | -61.9 | NC_006146.1 | + | 34231 | 0.69 | 0.484806 |
Target: 5'- -aUGGGGGGGGaggccgccgcaaggACGCcggGCCGGCUGGg -3' miRNA: 3'- ucACCCCUCCCg-------------UGUG---CGGUCGACCg -5' |
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28944 | 3' | -61.9 | NC_006146.1 | + | 61832 | 0.69 | 0.499538 |
Target: 5'- uGGUGGGGgcaguGGGGCugGUGCCGGgacucccggGGCa -3' miRNA: 3'- -UCACCCC-----UCCCGugUGCGGUCga-------CCG- -5' |
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28944 | 3' | -61.9 | NC_006146.1 | + | 34168 | 0.69 | 0.490306 |
Target: 5'- gGGUGGGGGGuGCGCccccaGCCGGaccCUGGUg -3' miRNA: 3'- -UCACCCCUCcCGUGug---CGGUC---GACCG- -5' |
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28944 | 3' | -61.9 | NC_006146.1 | + | 44397 | 0.69 | 0.490306 |
Target: 5'- uGUGGGGccGGGCACGgCGCCuuccucgaggGGCucccggggucUGGCa -3' miRNA: 3'- uCACCCCu-CCCGUGU-GCGG----------UCG----------ACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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