miRNA display CGI


Results 101 - 120 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 3' -61.9 NC_006146.1 + 138061 0.69 0.484806
Target:  5'- -aUGGGGGGGGaggccgccgcaaggACGCcggGCCGGCUGGg -3'
miRNA:   3'- ucACCCCUCCCg-------------UGUG---CGGUCGACCg -5'
28944 3' -61.9 NC_006146.1 + 34168 0.69 0.490306
Target:  5'- gGGUGGGGGGuGCGCccccaGCCGGaccCUGGUg -3'
miRNA:   3'- -UCACCCCUCcCGUGug---CGGUC---GACCG- -5'
28944 3' -61.9 NC_006146.1 + 162627 0.69 0.484806
Target:  5'- gAGUGGGGcucccagagagaacgGGGGUGCAUGCCcccucGUaGGCa -3'
miRNA:   3'- -UCACCCC---------------UCCCGUGUGCGGu----CGaCCG- -5'
28944 3' -61.9 NC_006146.1 + 61832 0.69 0.499538
Target:  5'- uGGUGGGGgcaguGGGGCugGUGCCGGgacucccggGGCa -3'
miRNA:   3'- -UCACCCC-----UCCCGugUGCGGUCga-------CCG- -5'
28944 3' -61.9 NC_006146.1 + 54025 0.69 0.498611
Target:  5'- aGGUGGcgccuccGGAGGGCGgcCAUGUCGGCggUGGUc -3'
miRNA:   3'- -UCACC-------CCUCCCGU--GUGCGGUCG--ACCG- -5'
28944 3' -61.9 NC_006146.1 + 57360 0.69 0.490306
Target:  5'- cGGUGaGGGAGgcugcGGCGgugGCGCCggugGGCUGGCc -3'
miRNA:   3'- -UCAC-CCCUC-----CCGUg--UGCGG----UCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 71961 0.69 0.490306
Target:  5'- aGGUGGGGcuggugacauuaGGGGauguCAUaCCAGUUGGCg -3'
miRNA:   3'- -UCACCCC------------UCCCgu--GUGcGGUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 44397 0.69 0.490306
Target:  5'- uGUGGGGccGGGCACGgCGCCuuccucgaggGGCucccggggucUGGCa -3'
miRNA:   3'- uCACCCCu-CCCGUGU-GCGG----------UCG----------ACCG- -5'
28944 3' -61.9 NC_006146.1 + 168441 0.7 0.402927
Target:  5'- gAG-GGGGcAGGGCugGCGCCGGgccGCg -3'
miRNA:   3'- -UCaCCCC-UCCCGugUGCGGUCgacCG- -5'
28944 3' -61.9 NC_006146.1 + 169373 0.7 0.402927
Target:  5'- gAG-GGGGcAGGGCugGCGCCGGgccGCg -3'
miRNA:   3'- -UCaCCCC-UCCCGugUGCGGUCgacCG- -5'
28944 3' -61.9 NC_006146.1 + 170304 0.7 0.402927
Target:  5'- gAG-GGGGcAGGGCugGCGCCGGgccGCg -3'
miRNA:   3'- -UCaCCCC-UCCCGugUGCGGUCgacCG- -5'
28944 3' -61.9 NC_006146.1 + 33153 0.7 0.41122
Target:  5'- gGGUGGGGGguggcccggcuGGGCACcgccGCGCCGccGCUcGGUc -3'
miRNA:   3'- -UCACCCCU-----------CCCGUG----UGCGGU--CGA-CCG- -5'
28944 3' -61.9 NC_006146.1 + 33277 0.7 0.41122
Target:  5'- gGGUGGGGGguggcccggcuGGGCACcgcuGCGCCGccGCUcGGUc -3'
miRNA:   3'- -UCACCCCU-----------CCCGUG----UGCGGU--CGA-CCG- -5'
28944 3' -61.9 NC_006146.1 + 33399 0.7 0.41122
Target:  5'- gGGUGGGGGguggcccgccuGGGCACcgcuGCGCCGccGCUcGGUc -3'
miRNA:   3'- -UCACCCCU-----------CCCGUG----UGCGGU--CGA-CCG- -5'
28944 3' -61.9 NC_006146.1 + 104838 0.7 0.419618
Target:  5'- -aUGGGGAGGuGgucacaGCGCGUCAGCUccuccGGCa -3'
miRNA:   3'- ucACCCCUCC-Cg-----UGUGCGGUCGA-----CCG- -5'
28944 3' -61.9 NC_006146.1 + 167263 0.7 0.436721
Target:  5'- --cGGGGAGGGCccggggccGCGCGUgGGgaUGGCc -3'
miRNA:   3'- ucaCCCCUCCCG--------UGUGCGgUCg-ACCG- -5'
28944 3' -61.9 NC_006146.1 + 168195 0.7 0.436721
Target:  5'- --cGGGGAGGGCccggggccGCGCGUgGGgaUGGCc -3'
miRNA:   3'- ucaCCCCUCCCG--------UGUGCGgUCg-ACCG- -5'
28944 3' -61.9 NC_006146.1 + 169127 0.7 0.436721
Target:  5'- --cGGGGAGGGCccggggccGCGCGUgGGgaUGGCc -3'
miRNA:   3'- ucaCCCCUCCCG--------UGUGCGgUCg-ACCG- -5'
28944 3' -61.9 NC_006146.1 + 170059 0.7 0.436721
Target:  5'- --cGGGGAGGGCccggggccGCGCGUgGGgaUGGCc -3'
miRNA:   3'- ucaCCCCUCCCG--------UGUGCGgUCg-ACCG- -5'
28944 3' -61.9 NC_006146.1 + 149972 0.7 0.428119
Target:  5'- gAGUGGGGgccAGGGCcuGCAgGUCGGCcGGa -3'
miRNA:   3'- -UCACCCC---UCCCG--UGUgCGGUCGaCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.