miRNA display CGI


Results 81 - 100 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 3' -61.9 NC_006146.1 + 112288 0.68 0.541006
Target:  5'- uAGUGGGGGgcuGGGUugAUGCCcccguagauguauugGcGCUGGUc -3'
miRNA:   3'- -UCACCCCU---CCCGugUGCGG---------------U-CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 85577 0.68 0.527673
Target:  5'- cGUGGGGuggcaGGaGGCAgcCGCCcgccucggaAGCUGGCa -3'
miRNA:   3'- uCACCCC-----UC-CCGUguGCGG---------UCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 153910 0.68 0.527673
Target:  5'- gAGgagGGGGAggcGGGCGCccuUGCCuGgaGGCa -3'
miRNA:   3'- -UCa--CCCCU---CCCGUGu--GCGGuCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 156988 0.68 0.527673
Target:  5'- gAGgagGGGGAggcGGGCGCccuUGCCuGgaGGCa -3'
miRNA:   3'- -UCa--CCCCU---CCCGUGu--GCGGuCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 71781 0.68 0.534325
Target:  5'- uGUGGagacgccugaggccGGAGGGCAgGCGCgGGacgugcggacCUGGCu -3'
miRNA:   3'- uCACC--------------CCUCCCGUgUGCGgUC----------GACCG- -5'
28944 3' -61.9 NC_006146.1 + 57921 0.68 0.545795
Target:  5'- -aUGcaGAGGGCGCugGCCGGCgccgccaUGGUg -3'
miRNA:   3'- ucACccCUCCCGUGugCGGUCG-------ACCG- -5'
28944 3' -61.9 NC_006146.1 + 101906 0.68 0.546754
Target:  5'- cGUGGGuGGGGUuuagaaAUGCGCCGG-UGGCc -3'
miRNA:   3'- uCACCCcUCCCG------UGUGCGGUCgACCG- -5'
28944 3' -61.9 NC_006146.1 + 68030 0.67 0.575764
Target:  5'- -cUGGGGcccGGC-CACGaCCAGgUGGCg -3'
miRNA:   3'- ucACCCCuc-CCGuGUGC-GGUCgACCG- -5'
28944 3' -61.9 NC_006146.1 + 44184 0.67 0.595299
Target:  5'- ---aGGGAGaGGCACGCGCggcugcacugCAGCcgggGGCg -3'
miRNA:   3'- ucacCCCUC-CCGUGUGCG----------GUCGa---CCG- -5'
28944 3' -61.9 NC_006146.1 + 114351 0.67 0.575764
Target:  5'- aGGUGGacGGGGGCcuggcccgcgugACGCGUCAGCUgcugauggccGGCg -3'
miRNA:   3'- -UCACCc-CUCCCG------------UGUGCGGUCGA----------CCG- -5'
28944 3' -61.9 NC_006146.1 + 65016 0.67 0.574791
Target:  5'- -uUGGGaaGGGGGCGCugGCC-GCUaucuugccuccccGGCu -3'
miRNA:   3'- ucACCC--CUCCCGUGugCGGuCGA-------------CCG- -5'
28944 3' -61.9 NC_006146.1 + 44312 0.67 0.575764
Target:  5'- uAGUGGGGgcuGGGGC-CGUGgCAGCcgggGGCu -3'
miRNA:   3'- -UCACCCC---UCCCGuGUGCgGUCGa---CCG- -5'
28944 3' -61.9 NC_006146.1 + 64653 0.67 0.624772
Target:  5'- --cGGGGccaGGGGCACGuCGCCguGGUaGGUg -3'
miRNA:   3'- ucaCCCC---UCCCGUGU-GCGG--UCGaCCG- -5'
28944 3' -61.9 NC_006146.1 + 97974 0.67 0.614933
Target:  5'- --cGGGGAagaugGGGCgGCugGCCAGCUc-- -3'
miRNA:   3'- ucaCCCCU-----CCCG-UGugCGGUCGAccg -5'
28944 3' -61.9 NC_006146.1 + 45526 0.67 0.61395
Target:  5'- cGGUGGGGGccugggccuccuuGGGC-UugGCCGccCUGGCc -3'
miRNA:   3'- -UCACCCCU-------------CCCGuGugCGGUc-GACCG- -5'
28944 3' -61.9 NC_006146.1 + 96825 0.67 0.605107
Target:  5'- uGGUGGGGAcGGGCGgGCa--GGUUGGg -3'
miRNA:   3'- -UCACCCCU-CCCGUgUGcggUCGACCg -5'
28944 3' -61.9 NC_006146.1 + 169595 0.67 0.628709
Target:  5'- gGGUGGGGccugagGGGGCGCGgcgauugucgcCGCCcucccucugcucccGUUGGCg -3'
miRNA:   3'- -UCACCCC------UCCCGUGU-----------GCGGu-------------CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 148516 0.67 0.585516
Target:  5'- --cGGGGccAGGGUggagaGCAUGCU-GCUGGCc -3'
miRNA:   3'- ucaCCCC--UCCCG-----UGUGCGGuCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 112049 0.67 0.582587
Target:  5'- aGGUGGGGuGGGCA---GCuCAGCggugguuucuucggUGGCg -3'
miRNA:   3'- -UCACCCCuCCCGUgugCG-GUCG--------------ACCG- -5'
28944 3' -61.9 NC_006146.1 + 167730 0.67 0.628709
Target:  5'- gGGUGGGGccugagGGGGCGCGgcgauugucgcCGCCcucccucugcucccGUUGGCg -3'
miRNA:   3'- -UCACCCC------UCCCGUGU-----------GCGGu-------------CGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.