miRNA display CGI


Results 101 - 120 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 3' -61.9 NC_006146.1 + 2447 0.67 0.624772
Target:  5'- --aGGGGccgGGGGCGCggcccgGCGCCAGCccuGCc -3'
miRNA:   3'- ucaCCCC---UCCCGUG------UGCGGUCGac-CG- -5'
28944 3' -61.9 NC_006146.1 + 1515 0.67 0.624772
Target:  5'- --aGGGGccgGGGGCGCggcccgGCGCCAGCccuGCc -3'
miRNA:   3'- ucaCCCC---UCCCGUG------UGCGGUCGac-CG- -5'
28944 3' -61.9 NC_006146.1 + 584 0.67 0.624772
Target:  5'- --aGGGGccgGGGGCGCggcccgGCGCCAGCccuGCc -3'
miRNA:   3'- ucaCCCC---UCCCGUG------UGCGGUCGac-CG- -5'
28944 3' -61.9 NC_006146.1 + 169595 0.67 0.628709
Target:  5'- gGGUGGGGccugagGGGGCGCGgcgauugucgcCGCCcucccucugcucccGUUGGCg -3'
miRNA:   3'- -UCACCCC------UCCCGUGU-----------GCGGu-------------CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 167730 0.67 0.628709
Target:  5'- gGGUGGGGccugagGGGGCGCGgcgauugucgcCGCCcucccucugcucccGUUGGCg -3'
miRNA:   3'- -UCACCCC------UCCCGUGU-----------GCGGu-------------CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 148516 0.67 0.585516
Target:  5'- --cGGGGccAGGGUggagaGCAUGCU-GCUGGCc -3'
miRNA:   3'- ucaCCCC--UCCCG-----UGUGCGGuCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 96118 0.67 0.623787
Target:  5'- gAGUGGGGGuucuGGuGCACacucuuuccuGCGUCuuggccccccggaGGCUGGCu -3'
miRNA:   3'- -UCACCCCU----CC-CGUG----------UGCGG-------------UCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 44184 0.67 0.595299
Target:  5'- ---aGGGAGaGGCACGCGCggcugcacugCAGCcgggGGCg -3'
miRNA:   3'- ucacCCCUC-CCGUGUGCG----------GUCGa---CCG- -5'
28944 3' -61.9 NC_006146.1 + 96825 0.67 0.605107
Target:  5'- uGGUGGGGAcGGGCGgGCa--GGUUGGg -3'
miRNA:   3'- -UCACCCCU-CCCGUgUGcggUCGACCg -5'
28944 3' -61.9 NC_006146.1 + 45526 0.67 0.61395
Target:  5'- cGGUGGGGGccugggccuccuuGGGC-UugGCCGccCUGGCc -3'
miRNA:   3'- -UCACCCCU-------------CCCGuGugCGGUc-GACCG- -5'
28944 3' -61.9 NC_006146.1 + 64653 0.67 0.624772
Target:  5'- --cGGGGccaGGGGCACGuCGCCguGGUaGGUg -3'
miRNA:   3'- ucaCCCC---UCCCGUGU-GCGG--UCGaCCG- -5'
28944 3' -61.9 NC_006146.1 + 79632 0.66 0.673899
Target:  5'- --cGGGGAcaGGGuCACAgGCCGGC-GaGCc -3'
miRNA:   3'- ucaCCCCU--CCC-GUGUgCGGUCGaC-CG- -5'
28944 3' -61.9 NC_006146.1 + 151400 0.66 0.673899
Target:  5'- cAGgcgGGGGAuGGCGCgGCGgCAGCUGu- -3'
miRNA:   3'- -UCa--CCCCUcCCGUG-UGCgGUCGACcg -5'
28944 3' -61.9 NC_006146.1 + 83638 0.66 0.677808
Target:  5'- uGGUGGcGGGGGCucuGCGgGCCagaccuccaccuuugGGUUGGCc -3'
miRNA:   3'- -UCACCcCUCCCG---UGUgCGG---------------UCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 146020 0.66 0.682685
Target:  5'- --aGGGGcaggGGGGCagcuccuggcacuGCGCGuCCAGCUGcaGCa -3'
miRNA:   3'- ucaCCCC----UCCCG-------------UGUGC-GGUCGAC--CG- -5'
28944 3' -61.9 NC_006146.1 + 30366 0.66 0.667047
Target:  5'- -uUGGGGugccgucccucccAGGGCuagguuugcuguaggGC-CGCCAGgUGGCg -3'
miRNA:   3'- ucACCCC-------------UCCCG---------------UGuGCGGUCgACCG- -5'
28944 3' -61.9 NC_006146.1 + 3264 0.66 0.664106
Target:  5'- -cUGGGGAcGGCGCAgGCCAcgaGCcGGg -3'
miRNA:   3'- ucACCCCUcCCGUGUgCGGU---CGaCCg -5'
28944 3' -61.9 NC_006146.1 + 48334 0.66 0.644457
Target:  5'- cGGUGGuGGGccaGGCGuccaguCugGCCAGCgGGCc -3'
miRNA:   3'- -UCACC-CCUc--CCGU------GugCGGUCGaCCG- -5'
28944 3' -61.9 NC_006146.1 + 51570 0.66 0.651341
Target:  5'- gGGUGGGGAGgcGGCGCG-GCCgaaggggggacugaGGCcGGUu -3'
miRNA:   3'- -UCACCCCUC--CCGUGUgCGG--------------UCGaCCG- -5'
28944 3' -61.9 NC_006146.1 + 2481 0.66 0.673899
Target:  5'- uGUGGccGGcGGGgGCAgG-CAGCUGGCc -3'
miRNA:   3'- uCACC--CCuCCCgUGUgCgGUCGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.