miRNA display CGI


Results 61 - 80 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 3' -61.9 NC_006146.1 + 68030 0.67 0.575764
Target:  5'- -cUGGGGcccGGC-CACGaCCAGgUGGCg -3'
miRNA:   3'- ucACCCCuc-CCGuGUGC-GGUCgACCG- -5'
28944 3' -61.9 NC_006146.1 + 69673 0.68 0.546754
Target:  5'- cAGcUGGGGGGuGGCAUAUcugaaggcuGCCAGgUGGa -3'
miRNA:   3'- -UC-ACCCCUC-CCGUGUG---------CGGUCgACCg -5'
28944 3' -61.9 NC_006146.1 + 70486 0.66 0.68366
Target:  5'- cGUGGaGAgugucaGGGCGCGgGUCAGCUcGGUu -3'
miRNA:   3'- uCACCcCU------CCCGUGUgCGGUCGA-CCG- -5'
28944 3' -61.9 NC_006146.1 + 71424 0.76 0.178651
Target:  5'- cGUGGGaAGGGCGCG-GCCGGCauuuUGGCa -3'
miRNA:   3'- uCACCCcUCCCGUGUgCGGUCG----ACCG- -5'
28944 3' -61.9 NC_006146.1 + 71781 0.68 0.534325
Target:  5'- uGUGGagacgccugaggccGGAGGGCAgGCGCgGGacgugcggacCUGGCu -3'
miRNA:   3'- uCACC--------------CCUCCCGUgUGCGgUC----------GACCG- -5'
28944 3' -61.9 NC_006146.1 + 71961 0.69 0.490306
Target:  5'- aGGUGGGGcuggugacauuaGGGGauguCAUaCCAGUUGGCg -3'
miRNA:   3'- -UCACCCC------------UCCCgu--GUGcGGUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 76394 0.66 0.65429
Target:  5'- --gGGGGAGGGaccggGgGCGCCgacGGC-GGCg -3'
miRNA:   3'- ucaCCCCUCCCg----UgUGCGG---UCGaCCG- -5'
28944 3' -61.9 NC_006146.1 + 79632 0.66 0.673899
Target:  5'- --cGGGGAcaGGGuCACAgGCCGGC-GaGCc -3'
miRNA:   3'- ucaCCCCU--CCC-GUGUgCGGUCGaC-CG- -5'
28944 3' -61.9 NC_006146.1 + 83638 0.66 0.677808
Target:  5'- uGGUGGcGGGGGCucuGCGgGCCagaccuccaccuuugGGUUGGCc -3'
miRNA:   3'- -UCACCcCUCCCG---UGUgCGG---------------UCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 85577 0.68 0.527673
Target:  5'- cGUGGGGuggcaGGaGGCAgcCGCCcgccucggaAGCUGGCa -3'
miRNA:   3'- uCACCCC-----UC-CCGUguGCGG---------UCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 89941 0.68 0.526726
Target:  5'- gGGUGGGGugguGGGUACAgguggauUGUCAGaugggcCUGGCu -3'
miRNA:   3'- -UCACCCCu---CCCGUGU-------GCGGUC------GACCG- -5'
28944 3' -61.9 NC_006146.1 + 92251 0.66 0.644457
Target:  5'- uGUGGcugcugcuGGGGGGCGgGC-CCGGCcuggGGCu -3'
miRNA:   3'- uCACC--------CCUCCCGUgUGcGGUCGa---CCG- -5'
28944 3' -61.9 NC_006146.1 + 95740 0.73 0.305244
Target:  5'- cAGUGGGGGGGGCugGUGUUGGCcccGGUu -3'
miRNA:   3'- -UCACCCCUCCCGugUGCGGUCGa--CCG- -5'
28944 3' -61.9 NC_006146.1 + 96118 0.67 0.623787
Target:  5'- gAGUGGGGGuucuGGuGCACacucuuuccuGCGUCuuggccccccggaGGCUGGCu -3'
miRNA:   3'- -UCACCCCU----CC-CGUG----------UGCGG-------------UCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 96825 0.67 0.605107
Target:  5'- uGGUGGGGAcGGGCGgGCa--GGUUGGg -3'
miRNA:   3'- -UCACCCCU-CCCGUgUGcggUCGACCg -5'
28944 3' -61.9 NC_006146.1 + 97974 0.67 0.614933
Target:  5'- --cGGGGAagaugGGGCgGCugGCCAGCUc-- -3'
miRNA:   3'- ucaCCCCU-----CCCG-UGugCGGUCGAccg -5'
28944 3' -61.9 NC_006146.1 + 98298 0.69 0.481155
Target:  5'- cGGUGGGGcugAGGGCGUGCuccgugGCCGuCUGGCa -3'
miRNA:   3'- -UCACCCC---UCCCGUGUG------CGGUcGACCG- -5'
28944 3' -61.9 NC_006146.1 + 99078 0.69 0.481155
Target:  5'- uAGUGGuGGAGGGCcCGCaGCCAGgUccGCa -3'
miRNA:   3'- -UCACC-CCUCCCGuGUG-CGGUCgAc-CG- -5'
28944 3' -61.9 NC_006146.1 + 99165 0.69 0.454217
Target:  5'- aGGUGGcGGAGGGCcaGCuCGuagagccaCCAGgUGGCg -3'
miRNA:   3'- -UCACC-CCUCCCG--UGuGC--------GGUCgACCG- -5'
28944 3' -61.9 NC_006146.1 + 100245 0.68 0.536231
Target:  5'- cAGUGGGGgcguucacgcacgGGGGCucCAUggaGCCuccuagcgggGGCUGGCa -3'
miRNA:   3'- -UCACCCC-------------UCCCGu-GUG---CGG----------UCGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.