miRNA display CGI


Results 101 - 120 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 3' -61.9 NC_006146.1 + 138061 0.69 0.484806
Target:  5'- -aUGGGGGGGGaggccgccgcaaggACGCcggGCCGGCUGGg -3'
miRNA:   3'- ucACCCCUCCCg-------------UGUG---CGGUCGACCg -5'
28944 3' -61.9 NC_006146.1 + 138308 0.73 0.291932
Target:  5'- uGUGGGuGAGaGGCGCGugaacUGCaAGCUGGCg -3'
miRNA:   3'- uCACCC-CUC-CCGUGU-----GCGgUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 141301 0.71 0.355461
Target:  5'- cGGcUGGGGGucGGGCugGCcuGCCAGggGGCa -3'
miRNA:   3'- -UC-ACCCCU--CCCGugUG--CGGUCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 141453 0.68 0.56605
Target:  5'- gAGUGGccagggaggacGGAGGGC-CugGCCuGCgGGg -3'
miRNA:   3'- -UCACC-----------CCUCCCGuGugCGGuCGaCCg -5'
28944 3' -61.9 NC_006146.1 + 141599 0.68 0.527673
Target:  5'- gAGgagGGGGAggcGGGCGCccuUGCCuGgaGGCa -3'
miRNA:   3'- -UCa--CCCCU---CCCGUGu--GCGGuCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 144379 0.71 0.355461
Target:  5'- cGGcUGGGGGucGGGCugGCcuGCCAGggGGCa -3'
miRNA:   3'- -UC-ACCCCU--CCCGugUG--CGGUCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 144531 0.68 0.56605
Target:  5'- gAGUGGccagggaggacGGAGGGC-CugGCCuGCgGGg -3'
miRNA:   3'- -UCACC-----------CCUCCCGuGugCGGuCGaCCg -5'
28944 3' -61.9 NC_006146.1 + 144677 0.68 0.527673
Target:  5'- gAGgagGGGGAggcGGGCGCccuUGCCuGgaGGCg -3'
miRNA:   3'- -UCa--CCCCU---CCCGUGu--GCGGuCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 145247 0.71 0.394741
Target:  5'- uGGUGGGGuGGG-ACACGaCCAGCgccGUg -3'
miRNA:   3'- -UCACCCCuCCCgUGUGC-GGUCGac-CG- -5'
28944 3' -61.9 NC_006146.1 + 146020 0.66 0.682685
Target:  5'- --aGGGGcaggGGGGCagcuccuggcacuGCGCGuCCAGCUGcaGCa -3'
miRNA:   3'- ucaCCCC----UCCCG-------------UGUGC-GGUCGAC--CG- -5'
28944 3' -61.9 NC_006146.1 + 147457 0.71 0.355461
Target:  5'- cGGcUGGGGGucGGGCugGCcuGCCAGggGGCa -3'
miRNA:   3'- -UC-ACCCCU--CCCGugUG--CGGUCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 147609 0.68 0.56605
Target:  5'- gAGUGGccagggaggacGGAGGGC-CugGCCuGCgGGg -3'
miRNA:   3'- -UCACC-----------CCUCCCGuGugCGGuCGaCCg -5'
28944 3' -61.9 NC_006146.1 + 147754 0.68 0.527673
Target:  5'- gAGgagGGGGAggcGGGCGCccuUGCCuGgaGGCa -3'
miRNA:   3'- -UCa--CCCCU---CCCGUGu--GCGGuCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 148516 0.67 0.585516
Target:  5'- --cGGGGccAGGGUggagaGCAUGCU-GCUGGCc -3'
miRNA:   3'- ucaCCCC--UCCCG-----UGUGCGGuCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 149972 0.7 0.428119
Target:  5'- gAGUGGGGgccAGGGCcuGCAgGUCGGCcGGa -3'
miRNA:   3'- -UCACCCC---UCCCG--UGUgCGGUCGaCCg -5'
28944 3' -61.9 NC_006146.1 + 150535 0.71 0.355461
Target:  5'- cGGcUGGGGGucGGGCugGCcuGCCAGggGGCa -3'
miRNA:   3'- -UC-ACCCCU--CCCGugUG--CGGUCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 150687 0.68 0.556378
Target:  5'- gAGUGGccagggggacGGAGGGC-CugGCCuGCgGGg -3'
miRNA:   3'- -UCACC----------CCUCCCGuGugCGGuCGaCCg -5'
28944 3' -61.9 NC_006146.1 + 150832 0.68 0.527673
Target:  5'- gAGgagGGGGAggcGGGCGCccuUGCCuGgaGGCa -3'
miRNA:   3'- -UCa--CCCCU---CCCGUGu--GCGGuCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 151400 0.66 0.673899
Target:  5'- cAGgcgGGGGAuGGCGCgGCGgCAGCUGu- -3'
miRNA:   3'- -UCa--CCCCUcCCGUG-UGCgGUCGACcg -5'
28944 3' -61.9 NC_006146.1 + 151551 0.74 0.232154
Target:  5'- gGGUGGGaGAGGGUgauuuugugauAgACGCCGGcCUGGUu -3'
miRNA:   3'- -UCACCC-CUCCCG-----------UgUGCGGUC-GACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.