miRNA display CGI


Results 41 - 60 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 3' -61.9 NC_006146.1 + 141301 0.71 0.355461
Target:  5'- cGGcUGGGGGucGGGCugGCcuGCCAGggGGCa -3'
miRNA:   3'- -UC-ACCCCU--CCCGugUG--CGGUCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 138308 0.73 0.291932
Target:  5'- uGUGGGuGAGaGGCGCGugaacUGCaAGCUGGCg -3'
miRNA:   3'- uCACCC-CUC-CCGUGU-----GCGgUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 138061 0.69 0.484806
Target:  5'- -aUGGGGGGGGaggccgccgcaaggACGCcggGCCGGCUGGg -3'
miRNA:   3'- ucACCCCUCCCg-------------UGUG---CGGUCGACCg -5'
28944 3' -61.9 NC_006146.1 + 137998 0.69 0.490306
Target:  5'- gGGUGGGGGGuGCGCccccaGCCGGaccCUGGUg -3'
miRNA:   3'- -UCACCCCUCcCGUGug---CGGUC---GACCG- -5'
28944 3' -61.9 NC_006146.1 + 136640 0.68 0.518225
Target:  5'- --cGGGGGGuGCACAacccccaGCCGGCccGGCg -3'
miRNA:   3'- ucaCCCCUCcCGUGUg------CGGUCGa-CCG- -5'
28944 3' -61.9 NC_006146.1 + 128090 0.66 0.661164
Target:  5'- aGGUGcGGGAGGGgccgaggcaggggaCAaugGCGuCCAGgaGGCg -3'
miRNA:   3'- -UCAC-CCCUCCC--------------GUg--UGC-GGUCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 127816 0.69 0.454217
Target:  5'- gAGcGGGaacaAGGGaGCGCGCCAgucGCUGGCa -3'
miRNA:   3'- -UCaCCCc---UCCCgUGUGCGGU---CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 126729 0.76 0.196712
Target:  5'- --aGGcuGGAGGGCAC-CGCCAGUUGuGCg -3'
miRNA:   3'- ucaCC--CCUCCCGUGuGCGGUCGAC-CG- -5'
28944 3' -61.9 NC_006146.1 + 126625 0.68 0.556378
Target:  5'- cGGUGGucGGuGGGCACACcccgggGCCcGCaggGGCa -3'
miRNA:   3'- -UCACC--CCuCCCGUGUG------CGGuCGa--CCG- -5'
28944 3' -61.9 NC_006146.1 + 124150 0.67 0.605107
Target:  5'- gGGUcGGGAGGcGaggaccCugGCCAGCgUGGCc -3'
miRNA:   3'- -UCAcCCCUCC-Cgu----GugCGGUCG-ACCG- -5'
28944 3' -61.9 NC_006146.1 + 123359 0.66 0.65429
Target:  5'- --cGaGGGAGcucuGGCGCugGCCGGgggccccgcaacCUGGCu -3'
miRNA:   3'- ucaC-CCCUC----CCGUGugCGGUC------------GACCG- -5'
28944 3' -61.9 NC_006146.1 + 121331 0.66 0.648392
Target:  5'- -cUGGaGGAcaucgaggccaugcuGGGC-CugGCCGGCgUGGCc -3'
miRNA:   3'- ucACC-CCU---------------CCCGuGugCGGUCG-ACCG- -5'
28944 3' -61.9 NC_006146.1 + 118059 0.66 0.65429
Target:  5'- --cGGGcGGGGGCG-GCGgCGGCUcGGCc -3'
miRNA:   3'- ucaCCC-CUCCCGUgUGCgGUCGA-CCG- -5'
28944 3' -61.9 NC_006146.1 + 114961 0.66 0.634615
Target:  5'- -aUGGcGGGGGGCACGCaGC-AGCccacGGCc -3'
miRNA:   3'- ucACC-CCUCCCGUGUG-CGgUCGa---CCG- -5'
28944 3' -61.9 NC_006146.1 + 114351 0.67 0.575764
Target:  5'- aGGUGGacGGGGGCcuggcccgcgugACGCGUCAGCUgcugauggccGGCg -3'
miRNA:   3'- -UCACCc-CUCCCG------------UGUGCGGUCGA----------CCG- -5'
28944 3' -61.9 NC_006146.1 + 113971 0.66 0.664106
Target:  5'- gAGgGGGGugcccgGGGGCucCGCGUUguugaaggAGCUGGCg -3'
miRNA:   3'- -UCaCCCC------UCCCGu-GUGCGG--------UCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 112288 0.68 0.541006
Target:  5'- uAGUGGGGGgcuGGGUugAUGCCcccguagauguauugGcGCUGGUc -3'
miRNA:   3'- -UCACCCCU---CCCGugUGCGG---------------U-CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 112049 0.67 0.582587
Target:  5'- aGGUGGGGuGGGCA---GCuCAGCggugguuucuucggUGGCg -3'
miRNA:   3'- -UCACCCCuCCCGUgugCG-GUCG--------------ACCG- -5'
28944 3' -61.9 NC_006146.1 + 106797 0.66 0.634615
Target:  5'- aAG-GGGGA-GGCACGCGagaauUCAGCcacacUGGCa -3'
miRNA:   3'- -UCaCCCCUcCCGUGUGC-----GGUCG-----ACCG- -5'
28944 3' -61.9 NC_006146.1 + 104838 0.7 0.419618
Target:  5'- -aUGGGGAGGuGgucacaGCGCGUCAGCUccuccGGCa -3'
miRNA:   3'- ucACCCCUCC-Cg-----UGUGCGGUCGA-----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.