miRNA display CGI


Results 61 - 80 of 143 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 3' -61.9 NC_006146.1 + 18946 0.71 0.363093
Target:  5'- --cGGGaAGGGCAUgugguGCGCCAGC-GGCc -3'
miRNA:   3'- ucaCCCcUCCCGUG-----UGCGGUCGaCCG- -5'
28944 3' -61.9 NC_006146.1 + 45559 0.68 0.518225
Target:  5'- --aGGGGAGGGaagACACGUCcGCcgaaguuuUGGCa -3'
miRNA:   3'- ucaCCCCUCCCg--UGUGCGGuCG--------ACCG- -5'
28944 3' -61.9 NC_006146.1 + 89941 0.68 0.526726
Target:  5'- gGGUGGGGugguGGGUACAgguggauUGUCAGaugggcCUGGCu -3'
miRNA:   3'- -UCACCCCu---CCCGUGU-------GCGGUC------GACCG- -5'
28944 3' -61.9 NC_006146.1 + 153910 0.68 0.527673
Target:  5'- gAGgagGGGGAggcGGGCGCccuUGCCuGgaGGCa -3'
miRNA:   3'- -UCa--CCCCU---CCCGUGu--GCGGuCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 106797 0.66 0.634615
Target:  5'- aAG-GGGGA-GGCACGCGagaauUCAGCcacacUGGCa -3'
miRNA:   3'- -UCaCCCCUcCCGUGUGC-----GGUCG-----ACCG- -5'
28944 3' -61.9 NC_006146.1 + 584 0.67 0.624772
Target:  5'- --aGGGGccgGGGGCGCggcccgGCGCCAGCccuGCc -3'
miRNA:   3'- ucaCCCC---UCCCGUG------UGCGGUCGac-CG- -5'
28944 3' -61.9 NC_006146.1 + 160114 0.67 0.599219
Target:  5'- uAGUGGaGGAuagagugaauGGGCggcggacuuuggcagGCugGCCuuuaaggccAGCUGGCg -3'
miRNA:   3'- -UCACC-CCU----------CCCG---------------UGugCGG---------UCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 104838 0.7 0.419618
Target:  5'- -aUGGGGAGGuGgucacaGCGCGUCAGCUccuccGGCa -3'
miRNA:   3'- ucACCCCUCC-Cg-----UGUGCGGUCGA-----CCG- -5'
28944 3' -61.9 NC_006146.1 + 45526 0.67 0.61395
Target:  5'- cGGUGGGGGccugggccuccuuGGGC-UugGCCGccCUGGCc -3'
miRNA:   3'- -UCACCCCU-------------CCCGuGugCGGUc-GACCG- -5'
28944 3' -61.9 NC_006146.1 + 97974 0.67 0.614933
Target:  5'- --cGGGGAagaugGGGCgGCugGCCAGCUc-- -3'
miRNA:   3'- ucaCCCCU-----CCCG-UGugCGGUCGAccg -5'
28944 3' -61.9 NC_006146.1 + 64653 0.67 0.624772
Target:  5'- --cGGGGccaGGGGCACGuCGCCguGGUaGGUg -3'
miRNA:   3'- ucaCCCC---UCCCGUGU-GCGG--UCGaCCG- -5'
28944 3' -61.9 NC_006146.1 + 169595 0.67 0.628709
Target:  5'- gGGUGGGGccugagGGGGCGCGgcgauugucgcCGCCcucccucugcucccGUUGGCg -3'
miRNA:   3'- -UCACCCC------UCCCGUGU-----------GCGGu-------------CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 137998 0.69 0.490306
Target:  5'- gGGUGGGGGGuGCGCccccaGCCGGaccCUGGUg -3'
miRNA:   3'- -UCACCCCUCcCGUGug---CGGUC---GACCG- -5'
28944 3' -61.9 NC_006146.1 + 44397 0.69 0.490306
Target:  5'- uGUGGGGccGGGCACGgCGCCuuccucgaggGGCucccggggucUGGCa -3'
miRNA:   3'- uCACCCCu-CCCGUGU-GCGG----------UCG----------ACCG- -5'
28944 3' -61.9 NC_006146.1 + 34168 0.69 0.490306
Target:  5'- gGGUGGGGGGuGCGCccccaGCCGGaccCUGGUg -3'
miRNA:   3'- -UCACCCCUCcCGUGug---CGGUC---GACCG- -5'
28944 3' -61.9 NC_006146.1 + 138061 0.69 0.484806
Target:  5'- -aUGGGGGGGGaggccgccgcaaggACGCcggGCCGGCUGGg -3'
miRNA:   3'- ucACCCCUCCCg-------------UGUG---CGGUCGACCg -5'
28944 3' -61.9 NC_006146.1 + 48334 0.66 0.644457
Target:  5'- cGGUGGuGGGccaGGCGuccaguCugGCCAGCgGGCc -3'
miRNA:   3'- -UCACC-CCUc--CCGU------GugCGGUCGaCCG- -5'
28944 3' -61.9 NC_006146.1 + 51570 0.66 0.651341
Target:  5'- gGGUGGGGAGgcGGCGCG-GCCgaaggggggacugaGGCcGGUu -3'
miRNA:   3'- -UCACCCCUC--CCGUGUgCGG--------------UCGaCCG- -5'
28944 3' -61.9 NC_006146.1 + 167730 0.67 0.628709
Target:  5'- gGGUGGGGccugagGGGGCGCGgcgauugucgcCGCCcucccucugcucccGUUGGCg -3'
miRNA:   3'- -UCACCCC------UCCCGUGU-----------GCGGu-------------CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 33399 0.7 0.41122
Target:  5'- gGGUGGGGGguggcccgccuGGGCACcgcuGCGCCGccGCUcGGUc -3'
miRNA:   3'- -UCACCCCU-----------CCCGUG----UGCGGU--CGA-CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.