miRNA display CGI


Results 81 - 100 of 143 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 3' -61.9 NC_006146.1 + 33153 0.7 0.41122
Target:  5'- gGGUGGGGGguggcccggcuGGGCACcgccGCGCCGccGCUcGGUc -3'
miRNA:   3'- -UCACCCCU-----------CCCGUG----UGCGGU--CGA-CCG- -5'
28944 3' -61.9 NC_006146.1 + 145247 0.71 0.394741
Target:  5'- uGGUGGGGuGGG-ACACGaCCAGCgccGUg -3'
miRNA:   3'- -UCACCCCuCCCgUGUGC-GGUCGac-CG- -5'
28944 3' -61.9 NC_006146.1 + 157845 0.71 0.370839
Target:  5'- --aGGGGAcGGGCACcgaGCGCCGcCUGGa -3'
miRNA:   3'- ucaCCCCU-CCCGUG---UGCGGUcGACCg -5'
28944 3' -61.9 NC_006146.1 + 17412 0.68 0.56605
Target:  5'- aAGUaGGGAcucaGGCcauGCGCGcCCAGUUGGCg -3'
miRNA:   3'- -UCAcCCCUc---CCG---UGUGC-GGUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 20490 0.68 0.56605
Target:  5'- aAGUaGGGAcucaGGCcauGCGCGcCCAGUUGGCg -3'
miRNA:   3'- -UCAcCCCUc---CCG---UGUGC-GGUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 23568 0.68 0.56605
Target:  5'- aAGUaGGGAcucaGGCcauGCGCGcCCAGUUGGCg -3'
miRNA:   3'- -UCAcCCCUc---CCG---UGUGC-GGUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 48334 0.66 0.644457
Target:  5'- cGGUGGuGGGccaGGCGuccaguCugGCCAGCgGGCc -3'
miRNA:   3'- -UCACC-CCUc--CCGU------GugCGGUCGaCCG- -5'
28944 3' -61.9 NC_006146.1 + 168662 0.66 0.638552
Target:  5'- cGGUGGGGccugagGGGGCGCGgcgauugucgcCGCCcucccucugcucccGUUGGCg -3'
miRNA:   3'- -UCACCCC------UCCCGUGU-----------GCGGu-------------CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 169595 0.67 0.628709
Target:  5'- gGGUGGGGccugagGGGGCGCGgcgauugucgcCGCCcucccucugcucccGUUGGCg -3'
miRNA:   3'- -UCACCCC------UCCCGUGU-----------GCGGu-------------CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 167730 0.67 0.628709
Target:  5'- gGGUGGGGccugagGGGGCGCGgcgauugucgcCGCCcucccucugcucccGUUGGCg -3'
miRNA:   3'- -UCACCCC------UCCCGUGU-----------GCGGu-------------CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 64653 0.67 0.624772
Target:  5'- --cGGGGccaGGGGCACGuCGCCguGGUaGGUg -3'
miRNA:   3'- ucaCCCC---UCCCGUGU-GCGG--UCGaCCG- -5'
28944 3' -61.9 NC_006146.1 + 97974 0.67 0.614933
Target:  5'- --cGGGGAagaugGGGCgGCugGCCAGCUc-- -3'
miRNA:   3'- ucaCCCCU-----CCCG-UGugCGGUCGAccg -5'
28944 3' -61.9 NC_006146.1 + 45526 0.67 0.61395
Target:  5'- cGGUGGGGGccugggccuccuuGGGC-UugGCCGccCUGGCc -3'
miRNA:   3'- -UCACCCCU-------------CCCGuGugCGGUc-GACCG- -5'
28944 3' -61.9 NC_006146.1 + 96825 0.67 0.605107
Target:  5'- uGGUGGGGAcGGGCGgGCa--GGUUGGg -3'
miRNA:   3'- -UCACCCCU-CCCGUgUGcggUCGACCg -5'
28944 3' -61.9 NC_006146.1 + 44184 0.67 0.595299
Target:  5'- ---aGGGAGaGGCACGCGCggcugcacugCAGCcgggGGCg -3'
miRNA:   3'- ucacCCCUC-CCGUGUGCG----------GUCGa---CCG- -5'
28944 3' -61.9 NC_006146.1 + 148516 0.67 0.585516
Target:  5'- --cGGGGccAGGGUggagaGCAUGCU-GCUGGCc -3'
miRNA:   3'- ucaCCCC--UCCCG-----UGUGCGGuCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 112049 0.67 0.582587
Target:  5'- aGGUGGGGuGGGCA---GCuCAGCggugguuucuucggUGGCg -3'
miRNA:   3'- -UCACCCCuCCCGUgugCG-GUCG--------------ACCG- -5'
28944 3' -61.9 NC_006146.1 + 44312 0.67 0.575764
Target:  5'- uAGUGGGGgcuGGGGC-CGUGgCAGCcgggGGCu -3'
miRNA:   3'- -UCACCCC---UCCCGuGUGCgGUCGa---CCG- -5'
28944 3' -61.9 NC_006146.1 + 65016 0.67 0.574791
Target:  5'- -uUGGGaaGGGGGCGCugGCC-GCUaucuugccuccccGGCu -3'
miRNA:   3'- ucACCC--CUCCCGUGugCGGuCGA-------------CCG- -5'
28944 3' -61.9 NC_006146.1 + 26646 0.68 0.56605
Target:  5'- aAGUaGGGAcucaGGCcauGCGCGcCCAGUUGGCg -3'
miRNA:   3'- -UCAcCCCUc---CCG---UGUGC-GGUCGACCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.