miRNA display CGI


Results 101 - 120 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 3' -61.9 NC_006146.1 + 169595 0.67 0.628709
Target:  5'- gGGUGGGGccugagGGGGCGCGgcgauugucgcCGCCcucccucugcucccGUUGGCg -3'
miRNA:   3'- -UCACCCC------UCCCGUGU-----------GCGGu-------------CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 167730 0.67 0.628709
Target:  5'- gGGUGGGGccugagGGGGCGCGgcgauugucgcCGCCcucccucugcucccGUUGGCg -3'
miRNA:   3'- -UCACCCC------UCCCGUGU-----------GCGGu-------------CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 64653 0.67 0.624772
Target:  5'- --cGGGGccaGGGGCACGuCGCCguGGUaGGUg -3'
miRNA:   3'- ucaCCCC---UCCCGUGU-GCGG--UCGaCCG- -5'
28944 3' -61.9 NC_006146.1 + 97974 0.67 0.614933
Target:  5'- --cGGGGAagaugGGGCgGCugGCCAGCUc-- -3'
miRNA:   3'- ucaCCCCU-----CCCG-UGugCGGUCGAccg -5'
28944 3' -61.9 NC_006146.1 + 45526 0.67 0.61395
Target:  5'- cGGUGGGGGccugggccuccuuGGGC-UugGCCGccCUGGCc -3'
miRNA:   3'- -UCACCCCU-------------CCCGuGugCGGUc-GACCG- -5'
28944 3' -61.9 NC_006146.1 + 20490 0.68 0.56605
Target:  5'- aAGUaGGGAcucaGGCcauGCGCGcCCAGUUGGCg -3'
miRNA:   3'- -UCAcCCCUc---CCG---UGUGC-GGUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 17412 0.68 0.56605
Target:  5'- aAGUaGGGAcucaGGCcauGCGCGcCCAGUUGGCg -3'
miRNA:   3'- -UCAcCCCUc---CCG---UGUGC-GGUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 112288 0.68 0.541006
Target:  5'- uAGUGGGGGgcuGGGUugAUGCCcccguagauguauugGcGCUGGUc -3'
miRNA:   3'- -UCACCCCU---CCCGugUGCGG---------------U-CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 56851 0.68 0.518225
Target:  5'- cGGcGGGGGcGGCAgcuUugGCUggGGCUGGCg -3'
miRNA:   3'- -UCaCCCCUcCCGU---GugCGG--UCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 38411 0.68 0.527673
Target:  5'- gGGUGGuGGcaucuGGGauuaGCGgGCCucuGCUGGCa -3'
miRNA:   3'- -UCACC-CCu----CCCg---UGUgCGGu--CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 85577 0.68 0.527673
Target:  5'- cGUGGGGuggcaGGaGGCAgcCGCCcgccucggaAGCUGGCa -3'
miRNA:   3'- uCACCCC-----UC-CCGUguGCGG---------UCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 100245 0.68 0.536231
Target:  5'- cAGUGGGGgcguucacgcacgGGGGCucCAUggaGCCuccuagcgggGGCUGGCa -3'
miRNA:   3'- -UCACCCC-------------UCCCGu-GUG---CGG----------UCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 69673 0.68 0.546754
Target:  5'- cAGcUGGGGGGuGGCAUAUcugaaggcuGCCAGgUGGa -3'
miRNA:   3'- -UC-ACCCCUC-CCGUGUG---------CGGUCgACCg -5'
28944 3' -61.9 NC_006146.1 + 155575 0.68 0.546754
Target:  5'- --cGGGGcgcccgccaGGGGCACACcggGGCUGGCc -3'
miRNA:   3'- ucaCCCC---------UCCCGUGUGcggUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 100839 0.68 0.56605
Target:  5'- uGUGGGGAGguGGCACugaucaaggccCGCCGGaaGGUc -3'
miRNA:   3'- uCACCCCUC--CCGUGu----------GCGGUCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 146020 0.66 0.682685
Target:  5'- --aGGGGcaggGGGGCagcuccuggcacuGCGCGuCCAGCUGcaGCa -3'
miRNA:   3'- ucaCCCC----UCCCG-------------UGUGC-GGUCGAC--CG- -5'
28944 3' -61.9 NC_006146.1 + 83638 0.66 0.677808
Target:  5'- uGGUGGcGGGGGCucuGCGgGCCagaccuccaccuuugGGUUGGCc -3'
miRNA:   3'- -UCACCcCUCCCG---UGUgCGG---------------UCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 151400 0.66 0.673899
Target:  5'- cAGgcgGGGGAuGGCGCgGCGgCAGCUGu- -3'
miRNA:   3'- -UCa--CCCCUcCCGUG-UGCgGUCGACcg -5'
28944 3' -61.9 NC_006146.1 + 79632 0.66 0.673899
Target:  5'- --cGGGGAcaGGGuCACAgGCCGGC-GaGCc -3'
miRNA:   3'- ucaCCCCU--CCC-GUGUgCGGUCGaC-CG- -5'
28944 3' -61.9 NC_006146.1 + 14334 0.68 0.56605
Target:  5'- aAGUaGGGAcucaGGCcauGCGCGcCCAGUUGGCg -3'
miRNA:   3'- -UCAcCCCUc---CCG---UGUGC-GGUCGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.