miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 3' -61.9 NC_006146.1 + 19158 0.66 0.664106
Target:  5'- gAGUGGaGGGGGaucGCcCGgGUCucuGCUGGCa -3'
miRNA:   3'- -UCACC-CCUCC---CGuGUgCGGu--CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 19295 0.66 0.68366
Target:  5'- cGGUGGaGcGGGuCACGCGCCgcuccaucaugGGCUacGGCa -3'
miRNA:   3'- -UCACCcCuCCC-GUGUGCGG-----------UCGA--CCG- -5'
28944 3' -61.9 NC_006146.1 + 20490 0.68 0.56605
Target:  5'- aAGUaGGGAcucaGGCcauGCGCGcCCAGUUGGCg -3'
miRNA:   3'- -UCAcCCCUc---CCG---UGUGC-GGUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 22236 0.66 0.664106
Target:  5'- gAGUGGaGGGGGaucGCcCGgGUCucuGCUGGCa -3'
miRNA:   3'- -UCACC-CCUCC---CGuGUgCGGu--CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 23568 0.68 0.56605
Target:  5'- aAGUaGGGAcucaGGCcauGCGCGcCCAGUUGGCg -3'
miRNA:   3'- -UCAcCCCUc---CCG---UGUGC-GGUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 25314 0.66 0.664106
Target:  5'- gAGUGGaGGGGGaucGCcCGgGUCucuGCUGGCa -3'
miRNA:   3'- -UCACC-CCUCC---CGuGUgCGGu--CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 26646 0.68 0.56605
Target:  5'- aAGUaGGGAcucaGGCcauGCGCGcCCAGUUGGCg -3'
miRNA:   3'- -UCAcCCCUc---CCG---UGUGC-GGUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 28392 0.66 0.664106
Target:  5'- gAGUGGaGGGGGaucGCcCGgGUCucuGCUGGCa -3'
miRNA:   3'- -UCACC-CCUCC---CGuGUgCGGu--CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 30366 0.66 0.667047
Target:  5'- -uUGGGGugccgucccucccAGGGCuagguuugcuguaggGC-CGCCAGgUGGCg -3'
miRNA:   3'- ucACCCC-------------UCCCG---------------UGuGCGGUCgACCG- -5'
28944 3' -61.9 NC_006146.1 + 32810 0.68 0.518225
Target:  5'- --cGGGGGGuGCACAacccccaGCCGGCccGGCg -3'
miRNA:   3'- ucaCCCCUCcCGUGUg------CGGUCGa-CCG- -5'
28944 3' -61.9 NC_006146.1 + 33153 0.7 0.41122
Target:  5'- gGGUGGGGGguggcccggcuGGGCACcgccGCGCCGccGCUcGGUc -3'
miRNA:   3'- -UCACCCCU-----------CCCGUG----UGCGGU--CGA-CCG- -5'
28944 3' -61.9 NC_006146.1 + 33277 0.7 0.41122
Target:  5'- gGGUGGGGGguggcccggcuGGGCACcgcuGCGCCGccGCUcGGUc -3'
miRNA:   3'- -UCACCCCU-----------CCCGUG----UGCGGU--CGA-CCG- -5'
28944 3' -61.9 NC_006146.1 + 33399 0.7 0.41122
Target:  5'- gGGUGGGGGguggcccgccuGGGCACcgcuGCGCCGccGCUcGGUc -3'
miRNA:   3'- -UCACCCCU-----------CCCGUG----UGCGGU--CGA-CCG- -5'
28944 3' -61.9 NC_006146.1 + 34010 0.68 0.508845
Target:  5'- aAGgcagGGGGGGGGUcgggGCAgGCgGGCgUGGUc -3'
miRNA:   3'- -UCa---CCCCUCCCG----UGUgCGgUCG-ACCG- -5'
28944 3' -61.9 NC_006146.1 + 34168 0.69 0.490306
Target:  5'- gGGUGGGGGGuGCGCccccaGCCGGaccCUGGUg -3'
miRNA:   3'- -UCACCCCUCcCGUGug---CGGUC---GACCG- -5'
28944 3' -61.9 NC_006146.1 + 34231 0.69 0.484806
Target:  5'- -aUGGGGGGGGaggccgccgcaaggACGCcggGCCGGCUGGg -3'
miRNA:   3'- ucACCCCUCCCg-------------UGUG---CGGUCGACCg -5'
28944 3' -61.9 NC_006146.1 + 38411 0.68 0.527673
Target:  5'- gGGUGGuGGcaucuGGGauuaGCGgGCCucuGCUGGCa -3'
miRNA:   3'- -UCACC-CCu----CCCg---UGUgCGGu--CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 39926 0.66 0.68366
Target:  5'- gGGUGGGGGaaguaucuGGGCGCcuccugacccugAUGacaCGGCUGGg -3'
miRNA:   3'- -UCACCCCU--------CCCGUG------------UGCg--GUCGACCg -5'
28944 3' -61.9 NC_006146.1 + 42881 0.7 0.445421
Target:  5'- uGGUGGGaggcgaagGGGGGCACguccuccccaagAC-CCGGUUGGCg -3'
miRNA:   3'- -UCACCC--------CUCCCGUG------------UGcGGUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 44019 0.68 0.556378
Target:  5'- uGUGGGGAGGGUcuuUugGCUcaaAGCcGGg -3'
miRNA:   3'- uCACCCCUCCCGu--GugCGG---UCGaCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.