miRNA display CGI


Results 61 - 80 of 136 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 5' -58.9 NC_006146.1 + 23102 0.72 0.405498
Target:  5'- cCGGUgUGCCAgcGUCCcccgcaGCCGCCCAg- -3'
miRNA:   3'- -GUCGgACGGUuuCAGG------CGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 26180 0.72 0.405498
Target:  5'- cCGGUgUGCCAgcGUCCcccgcaGCCGCCCAg- -3'
miRNA:   3'- -GUCGgACGGUuuCAGG------CGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 29258 0.72 0.405498
Target:  5'- cCGGUgUGCCAgcGUCCcccgcaGCCGCCCAg- -3'
miRNA:   3'- -GUCGgACGGUuuCAGG------CGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 50357 0.72 0.414103
Target:  5'- cCAGCCUggggaucuugGCCAGcAGUcCCGCCGCCgCAUc -3'
miRNA:   3'- -GUCGGA----------CGGUU-UCA-GGCGGCGG-GUAa -5'
28944 5' -58.9 NC_006146.1 + 52930 0.72 0.440579
Target:  5'- gGGCgCUgGCCuc-GUCCGCCGCCUAUc -3'
miRNA:   3'- gUCG-GA-CGGuuuCAGGCGGCGGGUAa -5'
28944 5' -58.9 NC_006146.1 + 31829 0.72 0.440579
Target:  5'- aGGCCcgugGCCAAAGUCCagcuuCCGCCCu-- -3'
miRNA:   3'- gUCGGa---CGGUUUCAGGc----GGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 130304 0.71 0.449616
Target:  5'- gCGGCaUGCgGAGGUUCgGCCGCCCAg- -3'
miRNA:   3'- -GUCGgACGgUUUCAGG-CGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 142591 0.71 0.449616
Target:  5'- uGGCCUGUUgauucucagguuGAGGUCCGCaUGCCCAa- -3'
miRNA:   3'- gUCGGACGG------------UUUCAGGCG-GCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 130397 0.71 0.449616
Target:  5'- aAGCCUccgaGgCAGAGUCCGCUGCCUu-- -3'
miRNA:   3'- gUCGGA----CgGUUUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 127435 0.71 0.46799
Target:  5'- aCGGCC-GCCGAGGaggCUGCCGCuCCAg- -3'
miRNA:   3'- -GUCGGaCGGUUUCa--GGCGGCG-GGUaa -5'
28944 5' -58.9 NC_006146.1 + 160601 0.71 0.486743
Target:  5'- -uGCUUGCCcccGAGGUCgGCCGCCUg-- -3'
miRNA:   3'- guCGGACGG---UUUCAGgCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 62318 0.7 0.515516
Target:  5'- gAGCCcagcgagGCCAGAGacgCCGCCGCCa--- -3'
miRNA:   3'- gUCGGa------CGGUUUCa--GGCGGCGGguaa -5'
28944 5' -58.9 NC_006146.1 + 157338 0.69 0.564875
Target:  5'- cCGGCCUGCUugcgcAGcCCGgCGCCCGg- -3'
miRNA:   3'- -GUCGGACGGuu---UCaGGCgGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 56586 0.69 0.564875
Target:  5'- gCGGCCgggcGCC-GAGcCCGCCGCCgGUc -3'
miRNA:   3'- -GUCGGa---CGGuUUCaGGCGGCGGgUAa -5'
28944 5' -58.9 NC_006146.1 + 10533 0.69 0.574909
Target:  5'- gCGGCCUGCCAAGGgcgCUGagaCGCCa--- -3'
miRNA:   3'- -GUCGGACGGUUUCa--GGCg--GCGGguaa -5'
28944 5' -58.9 NC_006146.1 + 24207 0.69 0.59408
Target:  5'- gGGCCUG-CGAGGUUCuguuggggccgggGCCGCCCAc- -3'
miRNA:   3'- gUCGGACgGUUUCAGG-------------CGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 21062 0.69 0.595092
Target:  5'- -cGCUUcGCCGAGGcCCugGCCGCCCAc- -3'
miRNA:   3'- guCGGA-CGGUUUCaGG--CGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 104332 0.69 0.605227
Target:  5'- aCGGCCUGCCugcg-CCGCCuGCgCCAc- -3'
miRNA:   3'- -GUCGGACGGuuucaGGCGG-CG-GGUaa -5'
28944 5' -58.9 NC_006146.1 + 8865 0.69 0.605227
Target:  5'- aCAGCCUGCCc----CCGCC-CCCAg- -3'
miRNA:   3'- -GUCGGACGGuuucaGGCGGcGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 67725 0.68 0.62555
Target:  5'- gGGCaaagGCCucGGUCCGCucCGCCCAg- -3'
miRNA:   3'- gUCGga--CGGuuUCAGGCG--GCGGGUaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.