miRNA display CGI


Results 81 - 100 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 5' -58.9 NC_006146.1 + 136121 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 136169 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 136214 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 136262 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 136307 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 136355 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 136400 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 136448 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 136493 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 136541 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 136586 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 136634 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 136679 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 136725 0.78 0.179271
Target:  5'- cCGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- -GUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 136771 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 136819 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 136864 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 136912 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 136957 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 137005 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.