Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28946 | 3' | -54.8 | NC_006146.1 | + | 64168 | 0.66 | 0.938848 |
Target: 5'- aGUCUgccAGgCUGGGUGGGGgcagCAGGa--- -3' miRNA: 3'- -CAGA---UCaGACCCACCCUa---GUCCgauu -5' |
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28946 | 3' | -54.8 | NC_006146.1 | + | 170228 | 0.66 | 0.938848 |
Target: 5'- ---gGGUCccGGGgcggGGGGUCGGGCg-- -3' miRNA: 3'- cagaUCAGa-CCCa---CCCUAGUCCGauu -5' |
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28946 | 3' | -54.8 | NC_006146.1 | + | 169297 | 0.66 | 0.938848 |
Target: 5'- ---gGGUCccGGGgcggGGGGUCGGGCg-- -3' miRNA: 3'- cagaUCAGa-CCCa---CCCUAGUCCGauu -5' |
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28946 | 3' | -54.8 | NC_006146.1 | + | 168365 | 0.66 | 0.938848 |
Target: 5'- ---gGGUCccGGGgcggGGGGUCGGGCg-- -3' miRNA: 3'- cagaUCAGa-CCCa---CCCUAGUCCGauu -5' |
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28946 | 3' | -54.8 | NC_006146.1 | + | 167433 | 0.66 | 0.938848 |
Target: 5'- ---gGGUCccGGGgcggGGGGUCGGGCg-- -3' miRNA: 3'- cagaUCAGa-CCCa---CCCUAGUCCGauu -5' |
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28946 | 3' | -54.8 | NC_006146.1 | + | 162033 | 0.68 | 0.830247 |
Target: 5'- -aCUGGgagcCUGGGggcGGGggCAGGCUGu -3' miRNA: 3'- caGAUCa---GACCCa--CCCuaGUCCGAUu -5' |
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28946 | 3' | -54.8 | NC_006146.1 | + | 141290 | 0.72 | 0.633781 |
Target: 5'- ---aGGUUUGGGggcggcugGGGGUCGGGCUGg -3' miRNA: 3'- cagaUCAGACCCa-------CCCUAGUCCGAUu -5' |
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28946 | 3' | -54.8 | NC_006146.1 | + | 153602 | 0.72 | 0.633781 |
Target: 5'- ---aGGUUUGGGggcggcugGGGGUCGGGCUGg -3' miRNA: 3'- cagaUCAGACCCa-------CCCUAGUCCGAUu -5' |
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28946 | 3' | -54.8 | NC_006146.1 | + | 150524 | 0.72 | 0.633781 |
Target: 5'- ---aGGUUUGGGggcggcugGGGGUCGGGCUGg -3' miRNA: 3'- cagaUCAGACCCa-------CCCUAGUCCGAUu -5' |
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28946 | 3' | -54.8 | NC_006146.1 | + | 147446 | 0.72 | 0.633781 |
Target: 5'- ---aGGUUUGGGggcggcugGGGGUCGGGCUGg -3' miRNA: 3'- cagaUCAGACCCa-------CCCUAGUCCGAUu -5' |
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28946 | 3' | -54.8 | NC_006146.1 | + | 144368 | 0.72 | 0.633781 |
Target: 5'- ---aGGUUUGGGggcggcugGGGGUCGGGCUGg -3' miRNA: 3'- cagaUCAGACCCa-------CCCUAGUCCGAUu -5' |
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28946 | 3' | -54.8 | NC_006146.1 | + | 156680 | 0.73 | 0.592039 |
Target: 5'- ---aGGUUUGGGgcggcugGGGGUCGGGCUGg -3' miRNA: 3'- cagaUCAGACCCa------CCCUAGUCCGAUu -5' |
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28946 | 3' | -54.8 | NC_006146.1 | + | 27668 | 1.05 | 0.005681 |
Target: 5'- gGUCUAGUCUGGGUGGGAUCAGGCUAAc -3' miRNA: 3'- -CAGAUCAGACCCACCCUAGUCCGAUU- -5' |
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28946 | 3' | -54.8 | NC_006146.1 | + | 15356 | 1.05 | 0.005681 |
Target: 5'- gGUCUAGUCUGGGUGGGAUCAGGCUAAc -3' miRNA: 3'- -CAGAUCAGACCCACCCUAGUCCGAUU- -5' |
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28946 | 3' | -54.8 | NC_006146.1 | + | 18434 | 1.05 | 0.005681 |
Target: 5'- gGUCUAGUCUGGGUGGGAUCAGGCUAAc -3' miRNA: 3'- -CAGAUCAGACCCACCCUAGUCCGAUU- -5' |
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28946 | 3' | -54.8 | NC_006146.1 | + | 21512 | 1.05 | 0.005681 |
Target: 5'- gGUCUAGUCUGGGUGGGAUCAGGCUAAc -3' miRNA: 3'- -CAGAUCAGACCCACCCUAGUCCGAUU- -5' |
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28946 | 3' | -54.8 | NC_006146.1 | + | 24590 | 1.05 | 0.005681 |
Target: 5'- gGUCUAGUCUGGGUGGGAUCAGGCUAAc -3' miRNA: 3'- -CAGAUCAGACCCACCCUAGUCCGAUU- -5' |
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28946 | 3' | -54.8 | NC_006146.1 | + | 12277 | 1.05 | 0.005681 |
Target: 5'- gGUCUAGUCUGGGUGGGAUCAGGCUAAc -3' miRNA: 3'- -CAGAUCAGACCCACCCUAGUCCGAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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