miRNA display CGI


Results 1 - 20 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28947 3' -62.9 NC_006146.1 + 12611 1.11 0.000537
Target:  5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3'
miRNA:   3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5'
28947 3' -62.9 NC_006146.1 + 15690 1.11 0.000537
Target:  5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3'
miRNA:   3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5'
28947 3' -62.9 NC_006146.1 + 18768 1.11 0.000537
Target:  5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3'
miRNA:   3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5'
28947 3' -62.9 NC_006146.1 + 21846 1.11 0.000537
Target:  5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3'
miRNA:   3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5'
28947 3' -62.9 NC_006146.1 + 28001 1.11 0.000537
Target:  5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3'
miRNA:   3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5'
28947 3' -62.9 NC_006146.1 + 24924 1.1 0.000681
Target:  5'- uCGAGGCCUCACAGCCCAGGCCAGGCCc -3'
miRNA:   3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5'
28947 3' -62.9 NC_006146.1 + 123028 0.85 0.039571
Target:  5'- cCGAGGCCgagGCGGCCCAGGuCCGGGCg -3'
miRNA:   3'- -GCUCCGGag-UGUCGGGUCC-GGUCCGg -5'
28947 3' -62.9 NC_006146.1 + 146827 0.8 0.08751
Target:  5'- gCGAGGCCgCGCcagcguagAGCCCGGGCCuggcucgGGGCCg -3'
miRNA:   3'- -GCUCCGGaGUG--------UCGGGUCCGG-------UCCGG- -5'
28947 3' -62.9 NC_006146.1 + 142335 0.8 0.089979
Target:  5'- gCGAGGCCggGCAGgCCGGGC-AGGCCg -3'
miRNA:   3'- -GCUCCGGagUGUCgGGUCCGgUCCGG- -5'
28947 3' -62.9 NC_006146.1 + 145413 0.8 0.089979
Target:  5'- gCGAGGCCggGCAGgCCGGGC-AGGCCg -3'
miRNA:   3'- -GCUCCGGagUGUCgGGUCCGgUCCGG- -5'
28947 3' -62.9 NC_006146.1 + 148491 0.8 0.089979
Target:  5'- gCGAGGCCggGCAGgCCGGGC-AGGCCg -3'
miRNA:   3'- -GCUCCGGagUGUCgGGUCCGgUCCGG- -5'
28947 3' -62.9 NC_006146.1 + 151569 0.8 0.089979
Target:  5'- gCGAGGCCggGCAGgCCGGGC-AGGCCg -3'
miRNA:   3'- -GCUCCGGagUGUCgGGUCCGgUCCGG- -5'
28947 3' -62.9 NC_006146.1 + 157724 0.8 0.089979
Target:  5'- gCGAGGCCggGCAGgCCGGGC-AGGCCg -3'
miRNA:   3'- -GCUCCGGagUGUCgGGUCCGgUCCGG- -5'
28947 3' -62.9 NC_006146.1 + 154647 0.8 0.089979
Target:  5'- gCGAGGCCggGCAGgCCGGGC-AGGCCg -3'
miRNA:   3'- -GCUCCGGagUGUCgGGUCCGgUCCGG- -5'
28947 3' -62.9 NC_006146.1 + 78830 0.79 0.097052
Target:  5'- -cGGGCCgccccccgcaGCAGcCCCAGGCCGGGCCc -3'
miRNA:   3'- gcUCCGGag--------UGUC-GGGUCCGGUCCGG- -5'
28947 3' -62.9 NC_006146.1 + 24046 0.79 0.102057
Target:  5'- gCGGGGUgaCGCGGCCCcGaGCCAGGCCc -3'
miRNA:   3'- -GCUCCGgaGUGUCGGGuC-CGGUCCGG- -5'
28947 3' -62.9 NC_006146.1 + 584 0.79 0.110021
Target:  5'- aGGGGCCgggggCGCGGCCCGGcGCCAGcCCu -3'
miRNA:   3'- gCUCCGGa----GUGUCGGGUC-CGGUCcGG- -5'
28947 3' -62.9 NC_006146.1 + 1515 0.79 0.110021
Target:  5'- aGGGGCCgggggCGCGGCCCGGcGCCAGcCCu -3'
miRNA:   3'- gCUCCGGa----GUGUCGGGUC-CGGUCcGG- -5'
28947 3' -62.9 NC_006146.1 + 3379 0.79 0.110021
Target:  5'- aGGGGCCgggggCGCGGCCCGGcGCCAGcCCu -3'
miRNA:   3'- gCUCCGGa----GUGUCGGGUC-CGGUCcGG- -5'
28947 3' -62.9 NC_006146.1 + 2447 0.79 0.110021
Target:  5'- aGGGGCCgggggCGCGGCCCGGcGCCAGcCCu -3'
miRNA:   3'- gCUCCGGa----GUGUCGGGUC-CGGUCcGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.