Results 21 - 40 of 562 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28947 | 3' | -62.9 | NC_006146.1 | + | 3486 | 0.68 | 0.497548 |
Target: 5'- cCGGGaCCcCGCgcuGGCCCccGCCAGGCCc -3' miRNA: 3'- -GCUCcGGaGUG---UCGGGucCGGUCCGG- -5' |
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28947 | 3' | -62.9 | NC_006146.1 | + | 3528 | 0.69 | 0.426935 |
Target: 5'- uCGGGaGCCcccuCAGCCCccGGCCGGcGCCg -3' miRNA: 3'- -GCUC-CGGagu-GUCGGGu-CCGGUC-CGG- -5' |
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28947 | 3' | -62.9 | NC_006146.1 | + | 3742 | 0.69 | 0.426935 |
Target: 5'- gCGuGGCCcuuCAGCCCGGGgUGGGUCc -3' miRNA: 3'- -GCuCCGGaguGUCGGGUCCgGUCCGG- -5' |
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28947 | 3' | -62.9 | NC_006146.1 | + | 3800 | 0.73 | 0.249497 |
Target: 5'- uGuGGCC-CACAGUCaggucuGGGUCAGGCCa -3' miRNA: 3'- gCuCCGGaGUGUCGGg-----UCCGGUCCGG- -5' |
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28947 | 3' | -62.9 | NC_006146.1 | + | 4365 | 0.7 | 0.385935 |
Target: 5'- aCGuGGCC--ACGGCCCcgcGGGCucccCAGGCCg -3' miRNA: 3'- -GCuCCGGagUGUCGGG---UCCG----GUCCGG- -5' |
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28947 | 3' | -62.9 | NC_006146.1 | + | 6414 | 0.66 | 0.611697 |
Target: 5'- uGGGGUCcCuuuGGCCCAgGGCCauguGGGCCc -3' miRNA: 3'- gCUCCGGaGug-UCGGGU-CCGG----UCCGG- -5' |
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28947 | 3' | -62.9 | NC_006146.1 | + | 7304 | 0.68 | 0.487513 |
Target: 5'- aGAGGCCUCAacugggcauuGCCCAuGCCAGugacuucccccacGCCc -3' miRNA: 3'- gCUCCGGAGUgu--------CGGGUcCGGUC-------------CGG- -5' |
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28947 | 3' | -62.9 | NC_006146.1 | + | 8510 | 0.66 | 0.631188 |
Target: 5'- --uGGCC-CACcggGGuCCCGGGCgCGGGCg -3' miRNA: 3'- gcuCCGGaGUG---UC-GGGUCCG-GUCCGg -5' |
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28947 | 3' | -62.9 | NC_006146.1 | + | 8558 | 0.69 | 0.452741 |
Target: 5'- -aAGGCgCUCauagcuGCAGCCCGGGCUgcagcaccAGGCa -3' miRNA: 3'- gcUCCG-GAG------UGUCGGGUCCGG--------UCCGg -5' |
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28947 | 3' | -62.9 | NC_006146.1 | + | 9482 | 0.71 | 0.325971 |
Target: 5'- gCGGGGCCaCACccGCCU-GGCaCAGGCCu -3' miRNA: 3'- -GCUCCGGaGUGu-CGGGuCCG-GUCCGG- -5' |
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28947 | 3' | -62.9 | NC_006146.1 | + | 10206 | 0.66 | 0.631188 |
Target: 5'- aCGAGacggaccuGCCUCuacCGGCCCuGGUCAuGuGCCg -3' miRNA: 3'- -GCUC--------CGGAGu--GUCGGGuCCGGU-C-CGG- -5' |
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28947 | 3' | -62.9 | NC_006146.1 | + | 11419 | 0.67 | 0.582581 |
Target: 5'- aGA-GCCU-GCAGgaCCAGGCCAagguGGCCa -3' miRNA: 3'- gCUcCGGAgUGUCg-GGUCCGGU----CCGG- -5' |
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28947 | 3' | -62.9 | NC_006146.1 | + | 12308 | 0.68 | 0.479374 |
Target: 5'- aGucGCCUCAa--CCCGGGCUucAGGCCc -3' miRNA: 3'- gCucCGGAGUgucGGGUCCGG--UCCGG- -5' |
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28947 | 3' | -62.9 | NC_006146.1 | + | 12459 | 0.67 | 0.534773 |
Target: 5'- cCGGGGCCUUucaGGCCC---UCGGGCCc -3' miRNA: 3'- -GCUCCGGAGug-UCGGGuccGGUCCGG- -5' |
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28947 | 3' | -62.9 | NC_006146.1 | + | 12611 | 1.11 | 0.000537 |
Target: 5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3' miRNA: 3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5' |
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28947 | 3' | -62.9 | NC_006146.1 | + | 12711 | 0.73 | 0.249497 |
Target: 5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3' miRNA: 3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5' |
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28947 | 3' | -62.9 | NC_006146.1 | + | 12721 | 0.69 | 0.46153 |
Target: 5'- gGGGGuCCUgACGGCCaaggAGGCCAaGGUg -3' miRNA: 3'- gCUCC-GGAgUGUCGGg---UCCGGU-CCGg -5' |
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28947 | 3' | -62.9 | NC_006146.1 | + | 12866 | 0.69 | 0.418529 |
Target: 5'- gCGAGGCUggGUGGCUgggCAGGCCGGGUCu -3' miRNA: 3'- -GCUCCGGagUGUCGG---GUCCGGUCCGG- -5' |
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28947 | 3' | -62.9 | NC_006146.1 | + | 13057 | 0.66 | 0.611697 |
Target: 5'- aGGcGGCgCUCGguGCCCguccccuccgGGGCCAGcGCg -3' miRNA: 3'- gCU-CCG-GAGUguCGGG----------UCCGGUC-CGg -5' |
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28947 | 3' | -62.9 | NC_006146.1 | + | 13385 | 0.68 | 0.497548 |
Target: 5'- cCGuGGUCUgCGCGGCCaCGGacugccucaGCCAGGUCu -3' miRNA: 3'- -GCuCCGGA-GUGUCGG-GUC---------CGGUCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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