Results 1 - 20 of 590 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28947 | 5' | -53 | NC_006146.1 | + | 12646 | 1.13 | 0.00351 |
Target: 5'- cCCGGCCAGGCCCCAUAACUAAAGACCc -3' miRNA: 3'- -GGCCGGUCCGGGGUAUUGAUUUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 15725 | 1.13 | 0.00351 |
Target: 5'- cCCGGCCAGGCCCCAUAACUAAAGACCc -3' miRNA: 3'- -GGCCGGUCCGGGGUAUUGAUUUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 18803 | 1.13 | 0.00351 |
Target: 5'- cCCGGCCAGGCCCCAUAACUAAAGACCc -3' miRNA: 3'- -GGCCGGUCCGGGGUAUUGAUUUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 21881 | 1.13 | 0.00351 |
Target: 5'- cCCGGCCAGGCCCCAUAACUAAAGACCc -3' miRNA: 3'- -GGCCGGUCCGGGGUAUUGAUUUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 24958 | 1.13 | 0.00351 |
Target: 5'- cCCGGCCAGGCCCCAUAACUAAAGACCc -3' miRNA: 3'- -GGCCGGUCCGGGGUAUUGAUUUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 28036 | 1.13 | 0.00351 |
Target: 5'- cCCGGCCAGGCCCCAUAACUAAAGACCc -3' miRNA: 3'- -GGCCGGUCCGGGGUAUUGAUUUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 34057 | 0.85 | 0.20364 |
Target: 5'- gCCGGCCggGGGUCCCGUGGCacGGGGCCg -3' miRNA: 3'- -GGCCGG--UCCGGGGUAUUGauUUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 123949 | 0.82 | 0.306814 |
Target: 5'- gCCGGCgaaauacgCGGGCaCCCuGUGGCUGGAGACCg -3' miRNA: 3'- -GGCCG--------GUCCG-GGG-UAUUGAUUUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 102882 | 0.82 | 0.306814 |
Target: 5'- gUGGCCGGGCCCCAguuugcGCUuacGGACCu -3' miRNA: 3'- gGCCGGUCCGGGGUau----UGAuu-UCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 34241 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 33498 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 33405 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 33591 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 33684 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 33777 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 34148 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 34055 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 33962 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 33870 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 34334 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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